View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21399_low_4 (Length: 517)
Name: NF21399_low_4
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21399_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 169 - 460
Target Start/End: Original strand, 11996115 - 11996407
Alignment:
| Q |
169 |
atctgtggaaattgtttatgtggttagttatttttgttactgccaattttctgtatgccagctctttgagtttataaattagatctaataaggtttaaga |
268 |
Q |
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| T |
11996115 |
atctgtggaaattgtttatgtggttagttatttttgttactgccaattttctgtatgccagctctttgagtttataaattagatctaataaggtttaaga |
11996214 |
T |
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| Q |
269 |
aaaaagcttatgttataaaaatgcttttgttactgccaatggtttg-aaaaaagagcttttcattacaaaagtatgttgaatgaactgatgatagtgatg |
367 |
Q |
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| T |
11996215 |
aaaaagcttatgttataaaaatgcttttgttactaccaatggtttgaaaaaaaaagcttttcattacaaaagtatgttgaatgaactgatgatagtgatg |
11996314 |
T |
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| Q |
368 |
ttagaataatcatttaattaacatcttaagatgatttactcacttatatgaaatcaccaaaaagttgagattttgaaatttatggtaaaaatt |
460 |
Q |
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| T |
11996315 |
ttggaataatcatttaattaacatcttaagatgatttacttacttatatgaaatcaccaaaaagttgagattttgaaatttatggtaagaatt |
11996407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 453 - 509
Target Start/End: Original strand, 11996429 - 11996485
Alignment:
| Q |
453 |
taaaaattgtacactgtaatttctttttctactcatagggtaccttgcacctttgct |
509 |
Q |
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| T |
11996429 |
taaaaattgtacactgtaatttctttttctactcatagggtaccttgtacctttgct |
11996485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 11995964 - 11995993
Alignment:
| Q |
18 |
cattttgaagtcttctgctgattctacact |
47 |
Q |
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| T |
11995964 |
cattttgaagtcttctgctgattctacact |
11995993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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