View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21399_low_5 (Length: 361)
Name: NF21399_low_5
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21399_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 41755035 - 41755387
Alignment:
| Q |
1 |
acatttaattgaattattgtgatgttggctatgaatatatgcgttaatacctgataaaatgaaaaggagaaaaagcaaagggagaagcatgattatgagt |
100 |
Q |
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| T |
41755035 |
acatttaattgaattattatgatgttggctatgaatatatgcgttaatacctgataaaatgaaaaggagaaaaagcaaagggagaagcatgattatgagt |
41755134 |
T |
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| Q |
101 |
tgctttgccattgatgaacataaacaatttggtgatgtgaaagtgtatcattctcttctatcctatttatttataagcac--atggttgatgtaggttgc |
198 |
Q |
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| T |
41755135 |
tgctttgccattgatgaacataaacaatttggtgatgtgaaagtgtatcattctctcctatcc----tatttataagcacaaatggttgatgtaggttac |
41755230 |
T |
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| Q |
199 |
tatagatagaaaggtcacagagttgaccagaaatgggtcaataatgattaagtaatttctattgtgaaatttttgtattgactatcaataaatattgaca |
298 |
Q |
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| T |
41755231 |
tatagatagaaaggtcacagagttgaccagaaatgggtcaataatgattaagtaatttctattgtgaaatttttgtattgactatcaataaatattgaca |
41755330 |
T |
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| Q |
299 |
gccccatctctttaatattaatatataaaataaatcatttatacgtcctatttattggtttat |
361 |
Q |
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| T |
41755331 |
gccccatctct------ttaatatataaaataaatcatttatacgtcctatttattggtttat |
41755387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 41760997 - 41761069
Alignment:
| Q |
45 |
taatacctgataaaatgaaaaggagaaaaagcaaagggagaagcatgattatgagttgctttgccattgatga |
117 |
Q |
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| T |
41760997 |
taatacctgataaaatgaaaagaagaaggagcaaaggaagaagcatgattatgagttgcttcgccattgatga |
41761069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 41761312 - 41761372
Alignment:
| Q |
255 |
ttctattgtgaaatttttgtattgactatcaataaatattgacagccccatctctttaata |
315 |
Q |
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| T |
41761312 |
ttctattctaaaaattttgtgttgactatcaataaatattgacaaacccatctctttaata |
41761372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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