View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_high_4 (Length: 427)
Name: NF2139_high_4
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 29466994 - 29467388
Alignment:
| Q |
16 |
atttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaaggatactctttttctgtgtcagtatagtaaccggtgtc |
115 |
Q |
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| T |
29466994 |
atttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaaggatactctttttctgtgtcagtatagtaaccggtgt- |
29467092 |
T |
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| Q |
116 |
cgtgtccgtgtcagtccttcataatattgattttgttaatgataaatgtactacaggaagggcttgaaactgagataaaccttggaagccaagctagttg |
215 |
Q |
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| T |
29467093 |
-----ccgtgtcagtcattcataatattgattttgttaatgataaatgtactacaggaagggcttgaaactgagataaaccttggaagccaagctagttg |
29467187 |
T |
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| Q |
216 |
gtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgtagagatgttggttactactggctgaggattatgatctatatcattgtatct |
315 |
Q |
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| T |
29467188 |
gtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgcagagatgttggttactactggctgaggattatgatctatatcattgtatct |
29467287 |
T |
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| Q |
316 |
atatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgcctgtggtgcatttatatcaggatttatgactttca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467288 |
atatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgcctgtggtgcatttatatcaggatttatgactttca |
29467387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 29434073 - 29434471
Alignment:
| Q |
16 |
atttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaaggatactctttttctgtgtcagtatagtaaccggtgtc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||| ||| ||||||| |
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| T |
29434073 |
atttagctatacacttcattacatataattcaactgatatctatgccgagctgaaatccttaggatattctttttctgtgccagtatcgtatccggtgt- |
29434171 |
T |
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| Q |
116 |
cgtgtccgtgtcagtccttcataatattgattttgttaatgataaatgtactacaggaagggcttgaaactgagataaaccttggaagccaagctagttg |
215 |
Q |
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|||||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||| |
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| T |
29434172 |
-----ccgtgtcagtacttcataatcttgatttagttaatgataaatgtattacaggaagggattgaaactgagacaaactatggaagccaagctagttg |
29434266 |
T |
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| Q |
216 |
gtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgtagagatgttggttactactggctgaggattatgatctatatcattgtatct |
315 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| || | |||||||||||| |
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| T |
29434267 |
gtggaagcaactctctacactgacgaggagatcatttgtgaacatgtgtagagatattggttactactggttgagaattataattaacatcattgtatct |
29434366 |
T |
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| Q |
316 |
atatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgcctgtggtgcatttatatcaggatttatgactttca |
415 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||| || |
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| T |
29434367 |
atatgtgttggaactctctattttgatgttggctatagctatacttccatcttggctcgcggtgcctgtggtgcatttgtaacaggatttatgactacca |
29434466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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