View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2139_high_8 (Length: 343)

Name: NF2139_high_8
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2139_high_8
NF2139_high_8
[»] chr2 (10 HSPs)
chr2 (136-320)||(33732569-33732760)
chr2 (136-317)||(44958116-44958305)
chr2 (136-320)||(16089822-16090012)
chr2 (139-320)||(3830900-3831086)
chr2 (157-320)||(14572995-14573166)
chr2 (136-320)||(37498862-37499056)
chr2 (136-320)||(36315561-36315753)
chr2 (136-320)||(6376238-6376424)
chr2 (135-320)||(37914235-37914427)
chr2 (195-320)||(24137151-24137287)
[»] chr4 (13 HSPs)
chr4 (136-320)||(28093095-28093287)
chr4 (136-320)||(49243815-49244006)
chr4 (133-320)||(21390952-21391146)
chr4 (136-320)||(3672274-3672466)
chr4 (136-320)||(7217765-7217957)
chr4 (136-320)||(6112630-6112821)
chr4 (136-320)||(44275706-44275897)
chr4 (138-320)||(35544912-35545102)
chr4 (136-320)||(46192359-46192551)
chr4 (136-320)||(45829257-45829448)
chr4 (198-315)||(51038768-51038893)
chr4 (274-316)||(43245522-43245564)
chr4 (243-320)||(52191314-52191391)
[»] chr3 (20 HSPs)
chr3 (136-320)||(21559561-21559753)
chr3 (136-320)||(34749897-34750089)
chr3 (134-316)||(46111941-46112131)
chr3 (137-321)||(22894679-22894870)
chr3 (136-320)||(51339783-51339972)
chr3 (136-325)||(43999984-44000181)
chr3 (136-320)||(30735495-30735686)
chr3 (138-320)||(36749406-36749596)
chr3 (136-317)||(48200688-48200877)
chr3 (136-320)||(36370337-36370529)
chr3 (134-320)||(38231293-38231486)
chr3 (136-235)||(29472901-29473000)
chr3 (243-320)||(29460660-29460737)
chr3 (243-320)||(29471512-29471589)
chr3 (133-320)||(39072275-39072464)
chr3 (135-312)||(20856152-20856334)
chr3 (136-320)||(39467101-39467292)
chr3 (136-320)||(50966131-50966310)
chr3 (136-320)||(51069266-51069445)
chr3 (195-298)||(53638157-53638267)
[»] chr8 (13 HSPs)
chr8 (136-320)||(30432339-30432530)
chr8 (136-320)||(36189216-36189406)
chr8 (144-319)||(44081781-44081964)
chr8 (136-320)||(31318805-31318997)
chr8 (136-317)||(18184556-18184744)
chr8 (136-320)||(42162598-42162790)
chr8 (136-317)||(12665347-12665537)
chr8 (133-316)||(10203668-10203859)
chr8 (136-316)||(43186031-43186218)
chr8 (134-314)||(33726017-33726205)
chr8 (243-299)||(42668895-42668951)
chr8 (243-315)||(31561-31633)
chr8 (256-315)||(3690729-3690788)
[»] chr6 (6 HSPs)
chr6 (136-320)||(3986905-3987096)
chr6 (136-320)||(3118046-3118238)
chr6 (136-320)||(13697569-13697759)
chr6 (137-320)||(14022934-14023124)
chr6 (136-320)||(24208444-24208635)
chr6 (136-320)||(15345659-15345848)
[»] chr7 (25 HSPs)
chr7 (134-320)||(36346562-36346755)
chr7 (136-320)||(26972202-26972394)
chr7 (136-320)||(28307494-28307686)
chr7 (136-314)||(31148296-31148481)
chr7 (136-317)||(34828069-34828256)
chr7 (136-320)||(42220963-42221154)
chr7 (135-320)||(7699881-7700074)
chr7 (135-320)||(7700079-7700272)
chr7 (135-320)||(7700277-7700470)
chr7 (135-320)||(7700475-7700668)
chr7 (136-320)||(34108426-34108618)
chr7 (138-320)||(30887700-30887890)
chr7 (136-320)||(45782659-45782851)
chr7 (136-322)||(5811163-5811356)
chr7 (136-320)||(13108148-13108338)
chr7 (138-316)||(21807324-21807509)
chr7 (196-314)||(23980137-23980262)
chr7 (136-302)||(36957447-36957619)
chr7 (136-242)||(46475109-46475216)
chr7 (136-229)||(29953571-29953665)
chr7 (243-315)||(38321014-38321086)
chr7 (198-320)||(15020282-15020408)
chr7 (198-285)||(20086690-20086784)
chr7 (255-286)||(29953661-29953692)
chr7 (136-211)||(42950036-42950111)
[»] chr5 (17 HSPs)
chr5 (134-320)||(39370927-39371121)
chr5 (136-320)||(40887941-40888133)
chr5 (134-320)||(2237276-2237470)
chr5 (136-320)||(13347128-13347320)
chr5 (135-320)||(1815618-1815807)
chr5 (136-309)||(14831555-14831736)
chr5 (156-320)||(9408058-9408230)
chr5 (139-320)||(27553376-27553564)
chr5 (136-283)||(31800595-31800749)
chr5 (243-322)||(33404550-33404629)
chr5 (136-242)||(42683684-42683791)
chr5 (137-320)||(4300544-4300734)
chr5 (195-320)||(17225319-17225449)
chr5 (136-320)||(19596067-19596258)
chr5 (196-316)||(19124532-19124657)
chr5 (201-311)||(41003915-41004031)
chr5 (243-317)||(12164254-12164328)
[»] chr1 (8 HSPs)
chr1 (136-322)||(34307137-34307331)
chr1 (138-320)||(39249864-39250054)
chr1 (136-316)||(2509028-2509216)
chr1 (136-320)||(46901734-46901926)
chr1 (133-320)||(19258669-19258863)
chr1 (136-320)||(28647353-28647544)
chr1 (243-315)||(10146971-10147043)
chr1 (243-316)||(29099821-29099893)
[»] scaffold0062 (1 HSPs)
scaffold0062 (133-316)||(6722-6913)
[»] scaffold0043 (1 HSPs)
scaffold0043 (136-316)||(87162-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (255-293)||(5943-5981)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 33732760 - 33732569
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33732660 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 44958305 - 44958116
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 16090012 - 16089822
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||  ||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt- 16089914  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctc 16089822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 139 - 320
Target Start/End: Original strand, 3830900 - 3831086
Alignment:
Q  139 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 238  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  239 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||       ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctc 3831086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 14573166 - 14572995
Alignment:
Q  157 atttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttt 248  Q
    ||||| |||||||| |||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||||       ||||||    
T  14573166 attttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttt 14573067  T
Q  249 taccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  14573066 tgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctc 14572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 37498862 - 37499056
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacc--catt 232  Q
    ||||||||||||||||||| | ||||| ||||||| |||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||  | ||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       ||||||| |||| ||||||||||||||||| |||||||||| |||||||||  |||||||||| || |||||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctc 37499056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 36315753 - 36315561
Alignment:
Q  136 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| |||||  ||||||| |||||||||||| ||||| |   |||||||||| | |||| |||||| || ||||||  ||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36315653 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 6376238 - 6376424
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||| ||||| ||||||| |  ||||||| | ||||| ||   |||||||||||||||| |||||| ||| ||||||||||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  236 atctctttgtt--tttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||  ||   |  |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||    
T  6376338 atctcttctttcaatggccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 37914235 - 37914427
Alignment:
Q  135 tggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||  | |||||||||| | |||| |||||| || ||||||| |||    
T  37914235 tggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtac-cagggtattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37914334 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctc 37914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 24137151 - 24137287
Alignment:
Q  195 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggt----gtaaaagg 283  Q
    ||||||||||||||||| |||||| ||| ||| || ||||||||||||       |||||||  ||| ||||||||||||||||||||    || |||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagg 24137250  T
Q  284 gtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||| ||||||||| ||||| |||||||| |||||    
T  24137251 gtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 28093095 - 28093287
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||| ||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 28093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 21390952 - 21391146
Alignment:
Q  133 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    |||||||||||||||||||||| | |||||||||||||  ||||||||||| ||||| ||  |||||||||||||||||||||||||||  |||| ||||    
T  21390952 tatggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcatt 21391051  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  21391052 ttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 21391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 7217957 - 7217765
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| ||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     |||||||       ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctc 7217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 6112821 - 6112630
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||||||||||||   ||||||||||||  ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| || |||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6112721 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctc 6112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 44275897 - 44275706
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||||| |||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       | |||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctc 44275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 320
Target Start/End: Complemental strand, 35545102 - 35544912
Alignment:
Q  138 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccattttca 236  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | ||||       ||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctc 35544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 46192551 - 46192359
Alignment:
Q  136 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||    |||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctc 46192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 45829257 - 45829448
Alignment:
Q  136 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | |||||  |||||||  ||||||||||||||| |     |||||||||| | |||| |||||| || ||||||| ||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||||    
T  45829356 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  198 tattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 289  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||       |||||||  ||| |||||||| ||||||||||||| ||||  |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  290 gccacctaagatggttcatgtataag 315  Q
    |||||||||| |||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  274 gtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 52191314 - 52191391
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||  ||| |||||||| | ||||||| ||| ||| ||| ||||||||||||| |||| |||||||||| ||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctc 52191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 21559753 - 21559561
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 21559561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 34749897 - 34750089
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||  ||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 46111941 - 46112131
Alignment:
Q  134 atggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||| |||||||||||||||  |||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||    
T  46111941 atggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttt 46112040  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    ||||||||||       ||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  46112041 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 22894870 - 22894679
Alignment:
Q  137 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||| |||||| | |||| |||||||  ||||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcc 321  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcc 22894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 51339783 - 51339972
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||| ||   |||||||||||||||||||||||||||||||||| |||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  51339883 atctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctc 51339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 44000181 - 43999984
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||||||||||   ||||||||||||   |||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctccattc 325  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctattc 43999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 30735495 - 30735686
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||| ||||||||||||||||| ||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccc-tttt 30735593  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     || ||||       ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  30735594 tatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctc 30735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 138 - 320
Target Start/End: Complemental strand, 36749596 - 36749406
Alignment:
Q  138 aaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttca 236  Q
    |||||||||||||||||   ||||||||||||   |||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctc 36749406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 48200877 - 48200688
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
    ||||||||       | ||||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||| |||||||    
T  48200777 catctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 36370337 - 36370529
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||| |   ||||||||||||   |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       |||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctc 36370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 38231486 - 38231293
Alignment:
Q  134 atggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || || ||| |||    
T  38231486 atggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-att 38231388  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||| ||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38231387 ttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 29460737 - 29460660
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29460737 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 29471589 - 29471512
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29471589 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 39072275 - 39072464
Alignment:
Q  133 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||||   ||||| ||||| |  | ||||||||||||||| |   ||||||||||||||     ||||| |||||||||||||    
T  39072275 tatggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccatt 39072369  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       ||||| | |||| |||||||||||| |||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  39072370 ttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctc 39072464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 20856152 - 20856334
Alignment:
Q  135 tggaaaaagataggtagacatcatttt-tcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||  | ||||| |||| | ||||||| || ||||||||||||||| |   |||||||| |||||||||| |||| ||||||| || |||    
T  20856152 tggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatcctttt 20856250  T
Q  234 tc-atctcttt----gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 312  Q
    |  |||| |||    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20856251 tatatctttttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 39467101 - 39467292
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||| ||| | ||||| ||||||| |  ||||||||| ||||| || ||| |||||||||||||| | |||| ||| |||||| |||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       | |||||  ||| |||||||||| |||||||||||||||||||||||| || ||| | ||||| ||| |||| |||||    
T  39467201 atctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctc 39467292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 50966310 - 50966131
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  50966310 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 50966223  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  50966222 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 50966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 51069445 - 51069266
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  51069445 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 51069358  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  51069357 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 51069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  195 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 287  Q
    ||||||||||| |||||||||||| ||||||||||  | |||||||||       |||||||||||| |||||| | ||||||||||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  288 atgccacctaa 298  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 30432530 - 30432339
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||| | |||||| | ||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30432430 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 36189406 - 36189216
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||  |||||||||| |||||||| ||||||||||||| | |||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189307 atctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 144 - 319
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  144 ataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt 242  Q
    ||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  243 -------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 319  Q
           ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 31318997 - 31318805
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||||  | |||||| |||||||||||||||||||||||||| ||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctc 31318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 18184744 - 18184556
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||| |||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
    |||||||       |||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||| ||||||||    
T  18184644 atctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||||||||||   ||||||||||||   ||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       |||||||  |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 12665537 - 12665347
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcaccc-attt 233  Q
    ||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||  |||||||||||||||||||||||||||||||||||  |||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
    | |||||||       ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 133 - 316
Target Start/End: Complemental strand, 10203859 - 10203668
Alignment:
Q  133 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 231  Q
    |||||||||||||||||||||| | ||||||||||| | ||||||||||||| ||||||||  || |||||||||||||||| ||||||||| ||||| |    
T  10203859 tatggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctt 10203760  T
Q  232 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||||||||||       | |||||  |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  10203759 tttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 316
Target Start/End: Complemental strand, 43186218 - 43186031
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||||| ||||||||||||||  |||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||| ||       ||||||| |||| | |||||||||||||  |||||||||| || ||||||||||||  ||||| ||||||||||    
T  43186118 atcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 314
Target Start/End: Complemental strand, 33726205 - 33726017
Alignment:
Q  134 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcaccca-tt 232  Q
    ||||||||||||||||||||| | ||||| ||||||| |  ||||||||  ||||| ||  ||||||||||||||||| |||||| ||| ||| ||| ||    
T  33726205 atggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactt 33726106  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 314  Q
    ||||||||||       ||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||||    
T  33726105 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 42668895 - 42668951
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 299  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  42668895 tgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 31561 - 31633
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 315  Q
    ||||||| |||| |||||||| ||| ||||||||| |||| |||||||| |||||||||||| ||| ||||||    
T  31561 tgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 3690729 - 3690788
Alignment:
Q  256 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 315  Q
    |||||||| ||||||||| | | ||||| |||||| ||||||||||| ||||||||||||    
T  3690729 tgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 3986905 - 3987096
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||||||||||||||||||||||||||    ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || |||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3987005 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 3118046 - 3118238
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||| ||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     |||| ||       ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctc 3118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 13697759 - 13697569
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||   | |||||||||||||||| ||||||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       |||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  13697659 atctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 320
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  137 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 236  Q
    |||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 24208635 - 24208444
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||| ||||| ||||||| || || |||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||       ||||||| |||| | ||||||||||||||||||||||||  |||||| ||||||| ||||||| |||||||| |||||    
T  24208535 atctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 15345659 - 15345848
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||| | ||||||||||||||  |||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||| ||       ||||||| ||||||||||||||  ||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  15345759 atcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctc 15345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 134 - 320
Target Start/End: Original strand, 36346562 - 36346755
Alignment:
Q  134 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| || ||    
T  36346562 atggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttt 36346660  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36346661 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 36346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 26972202 - 26972394
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  235 catctct-------ttgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||        ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 26972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 28307494 - 28307686
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||| ||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 136 - 314
Target Start/End: Complemental strand, 31148481 - 31148296
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||||||||||||   ||||||||||||| |||||  ||||||||| | ||  |  ||||||||||||||||||||||||||||||||||||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 314  Q
    |||||||       ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148381 atctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 317
Target Start/End: Complemental strand, 34828256 - 34828069
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||| |  |||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
    |||||||       ||||||| ||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||    
T  34828156 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 42220963 - 42221154
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| ||||    
T  42220963 ggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
     || ||||       ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 7699881 - 7700074
Alignment:
Q  135 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7699881 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7699980  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7699981 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 7700079 - 7700272
Alignment:
Q  135 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700079 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700178  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700179 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 7700277 - 7700470
Alignment:
Q  135 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700277 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700376  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700377 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 7700475 - 7700668
Alignment:
Q  135 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 233  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700475 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700574  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700575 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 34108618 - 34108426
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||| ||| | ||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       |||||||  ||  |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 138 - 320
Target Start/End: Complemental strand, 30887890 - 30887700
Alignment:
Q  138 aaaaagataggta-gacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 236  Q
    ||||||||| ||| |||| | ||||||||||||  ||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||       ||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30887790 tctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 45782659 - 45782851
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||| ||||||   |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 5811163 - 5811356
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 322  Q
    |||||||       ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5811263 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctcca 5811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 13108338 - 13108148
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||| |||||||  | ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||| |    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-c 13108240  T
Q  236 atctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||        |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 138 - 316
Target Start/End: Original strand, 21807324 - 21807509
Alignment:
Q  138 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcat 237  Q
    |||||||||||| |||| | ||||| ||||||  || || ||||||||| || ||  ||||||||||||||||| |||| | ||||||| ||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  238 ctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||||       | ||||| |||| | |||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  21807424 ctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 23980262 - 23980137
Alignment:
Q  196 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 288  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| |||||||||||||||||||||||||||||||||    
T  23980262 ggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgta 23980163  T
Q  289 tgccacctaagatggttcatgtataa 314  Q
    ||||||||| | ||||| ||||||||    
T  23980162 tgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 36957619 - 36957447
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    |||||||||||||||||||  |||||| |||||||  | || ||||||| |||| ||  |||||||||||||||||||||| | || |||| ||||||||    
T  36957619 ggaaaaagataggtagacacaattttttatacacctttcatatacaccc-atgtgttgggggtattttagtaattttacattacattatcatccattttc 36957521  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatg 302  Q
    |||||||       | |||||  |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  36957520 atctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 46475216 - 46475109
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctggg-tattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||| ||||||| || ||||||| | ||||| || |||| |||||||||||||| |||||| ||| |||||| ||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  235 catctctt 242  Q
    ||||||||    
T  46475116 catctctt 46475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 29953571 - 29953665
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcaccc 229  Q
    ||||||||||||||||||| | ||||||||||||  |||||||| ||  |||||||||  || ||||| ||||||||||||||||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 38321086 - 38321014
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 315  Q
    ||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||||||||| |||||||||    
T  38321086 tgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 15020408 - 15020282
Alignment:
Q  198 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 290  Q
    |||||||||||||| |||||||||| |||||| ||| | ||||||       ||||||| |||  |||||||||||||||  ||||||||||| ||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatg 15020312  T
Q  291 ccacctaagatggttcatgtataagagctc 320  Q
    ||||||| | ||||| |||||||| |||||    
T  15020311 ccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  198 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 285  Q
    |||||||||||||| |||||| |||||||||| |||| |||||||       ||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  255 gtgtcacaaatgtgtgtgggtgtaaaagggtg 286  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 42950036 - 42950111
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattt 211  Q
    ||||||||||||||||||| | ||||| |||||||    ||||||||||||||| |   |||||||||||||||||    
T  42950036 ggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 39371121 - 39370927
Alignment:
Q  134 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||    
T  39371121 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttt 39371022  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39371021 ttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 40887941 - 40888133
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||| || ||||   |||||||||||||||||||||||||||| ||||| ||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctc 40888133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 2237470 - 2237276
Alignment:
Q  134 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||| ||    
T  2237470 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttt 2237371  T
Q  233 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||||       ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2237370 ttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 13347320 - 13347128
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||| ||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctc 13347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 1815618 - 1815807
Alignment:
Q  135 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||||||||||| | ||||||||| |  |   |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  1815618 tggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1815715 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctc 1815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 309
Target Start/End: Complemental strand, 14831736 - 14831555
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||| ||| | ||||||||||||  |||||||||||||| | |||||  |||||||| | |||||||||||||||||||||||| ||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatg 309  Q
    ||||||||       ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 320
Target Start/End: Original strand, 9408058 - 9408230
Alignment:
Q  156 catttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttt 247  Q
    ||||||||||||||  |||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||    
T  9408058 catttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttt 9408157  T
Q  248 ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    || |||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  9408158 ttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctc 9408230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 320
Target Start/End: Original strand, 27553376 - 27553564
Alignment:
Q  139 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 238  Q
    |||| |||| |||||| | ||||||||||||| ||||||||||||| |||| ||  | |||||||||||||||||||||| || ||||||  ||||| ||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  239 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||       ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  27553476 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctc 27553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 31800749 - 31800595
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||| ||||| | ||||||||||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| |||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagg 283  Q
    |||| ||       | ||||| |||||||||| ||||||||||||||||||||||    
T  31800649 atcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 33404550 - 33404629
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 322  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  33404550 tgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctcca 33404629  T

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Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 42683791 - 42683684
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||| |||||| ||||  ||||||||||||||||||||||||||||| || || ||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  235 catctctt 242  Q
    ||||||||    
T  42683691 catctctt 42683684  T

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Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 137 - 320
Target Start/End: Original strand, 4300544 - 4300734
Alignment:
Q  137 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 236  Q
    ||||||||| | |||||||| ||||| ||||| | || ||||||||| ||||| ||  || ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||       ||||||| |||  |||||||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctc 4300734  T

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Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 17225449 - 17225319
Alignment:
Q  195 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 287  Q
    ||||||||||||||||| |||||| |||||||||  ||||||||||||       |||||||  ||| ||||||||||||||||||||||||||  | ||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagt 17225352  T
Q  288 atgccacctaagatggttcatgtataagagctc 320  Q
    |||||||||||  ||||||||||||||||||||    
T  17225351 atgccacctaaagtggttcatgtataagagctc 17225319  T

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Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  136 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| |||||  | | ||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    || |||||       ||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

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Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 19124532 - 19124657
Alignment:
Q  196 ggtattttagtaattttacatcatatcatcacccattttcatctctt------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 289  Q
    ||||||||||||||||||||||||||||||||    |||||||||||      ||||||| ||||  ||||||| ||||||||||||| |||  ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttctttaatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtat 19124630  T
Q  290 gccacctaagatggttcatgtataaga 316  Q
    |||| ||||||| || |||||||||||    
T  19124631 gccatctaagatagtccatgtataaga 19124657  T

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Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  201 tttagtaattttacatcatatcatcacccattttcatctctttgt------ttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccac 294  Q
    |||||||||||||||||| ||||||| || |||| || ||||| |      |||| |||| ||||| |||||||| || |||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccac 41004014  T
Q  295 ctaagatggttcatgta 311  Q
    ||||  |||||||||||    
T  41004015 ctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 12164328 - 12164254
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 317  Q
    ||||||| |||| || ||||| |||||||| || | ||||  ||| |||||||||||||||||||||||||||||    
T  12164328 tgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

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Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 34307137 - 34307331
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 322  Q
    ||| ||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctcca 34307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 138 - 320
Target Start/End: Original strand, 39249864 - 39250054
Alignment:
Q  138 aaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttca 236  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  237 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 39250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 316
Target Start/End: Complemental strand, 2509216 - 2509028
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||| ||||| ||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 46901734 - 46901926
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 234  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||| ||||||||   | |||||| |||||||||||||||||||||||||| ||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  235 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    ||||||||       ||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 19258669 - 19258863
Alignment:
Q  133 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 232  Q
    |||| ||||||||||||||||| | ||||| ||||| | || ||||||||||||||| ||  |  ||||||| |||||| |||||| |||| ||||| ||    
T  19258669 tatgaaaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 19258768  T
Q  233 ttcatctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||||||||||       |||||| |||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||||| |||||    
T  19258769 ttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctc 19258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 28647544 - 28647353
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 235  Q
    ||||||||||||||||||| | ||||| ||||| | || ||||||| ||||||| ||  |  ||||||| |||||| |||||| |||| ||||| |||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  236 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 320  Q
    |||| ||       ||||||| |||  | |||||||| ||||||||||||||| | ||||||| |||| || |||||||||||||| |||||    
T  28647444 atctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 10147043 - 10146971
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 315  Q
    ||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  10147043 tgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 29099893 - 29099821
Alignment:
Q  243 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||||||  ||| ||||||||||||||||||  || |||| |||||||||| ||||| ||||| ||||||||||    
T  29099893 tgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 133 - 316
Target Start/End: Complemental strand, 6913 - 6722
Alignment:
Q  133 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 231  Q
    |||||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  || ||||| |||||||||||||||||||||||||| |    
T  6913 tatggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctt 6814  T
Q  232 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6813 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 316
Target Start/End: Original strand, 87162 - 87350
Alignment:
Q  136 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatat--catcacccattt 233  Q
    ||||||||||||||||||| | |||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||| || ||||  ||||||   |||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  234 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 316  Q
    |||||||||       ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  255 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 293  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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