View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_10 (Length: 307)
Name: NF2139_low_10
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 55671377 - 55671487
Alignment:
| Q |
8 |
cgaagaatatgggagacttacctagtcatcgtgaatatcacttttgtagcacttgatgg-aagaaaaattattatattttaaacccaagatagaaagaac |
106 |
Q |
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| T |
55671377 |
cgaaaaatatgggagacttacctagtcatcgtgaatatcacttttgtagcacttgctggaaaaaaaaattattatattttaaacccaatatagaaagaac |
55671476 |
T |
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| Q |
107 |
tacgtaataca |
117 |
Q |
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| T |
55671477 |
tacgtaataca |
55671487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 55671518 - 55671611
Alignment:
| Q |
147 |
ctaccaaacaatatgacccgttgagttcaatctatgtaggtccctaataaaaataaaaatatgcacaacccaatgaaacacacacttcaacagtggat |
244 |
Q |
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| T |
55671518 |
ctactaaacaatatgacccgttgagttcaat----gtaggtccctaataaaaataaaaatatgcacaacccaatgaaacacacacttcaacagtggat |
55671611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 55671637 - 55671673
Alignment:
| Q |
252 |
tcactcatcattgtaggagactgattacagtctcacg |
288 |
Q |
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| T |
55671637 |
tcactcatcattgtaggagactgattacagtctcacg |
55671673 |
T |
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