View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_12 (Length: 266)
Name: NF2139_low_12
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 42550848 - 42551076
Alignment:
| Q |
21 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
120 |
Q |
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| T |
42550848 |
actataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttg |
42550947 |
T |
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| Q |
121 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaaga |
220 |
Q |
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| T |
42550948 |
gggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaaga |
42551047 |
T |
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| Q |
221 |
ggtttggatgctcattcttggtcgcatgt |
249 |
Q |
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| T |
42551048 |
ggtttggatgctcattcttggtcgcatgt |
42551076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 42519182 - 42519050
Alignment:
| Q |
76 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggagg |
175 |
Q |
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| T |
42519182 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctggtgg |
42519083 |
T |
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| Q |
176 |
tgtgctttttcttgctggtgctgccttgaatgg |
208 |
Q |
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| T |
42519082 |
tgttctttttctcgccggagctgccatgaatgg |
42519050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 1240992 - 1240829
Alignment:
| Q |
45 |
tactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgt |
144 |
Q |
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| T |
1240992 |
tactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatct |
1240893 |
T |
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| Q |
145 |
ttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatgg |
208 |
Q |
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| T |
1240892 |
ttggaagacatcttaccatgctctctggtggtgttctttttctcgctggagctgctatgaatgg |
1240829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 18235432 - 18235221
Alignment:
| Q |
38 |
caaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaact |
137 |
Q |
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|||||||||||||| |||||| ||||||||||||||||| || || ||||||||||| ||||||||||| | ||||| |||||||| || ||||| |
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| T |
18235432 |
caaccagtactgcaaattcgacagccaaacgttaacattattcacatcctctttgtacgtggctgctcttatcgcatctcttggggcgtcgtggctaact |
18235333 |
T |
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| Q |
138 |
cgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattc |
237 |
Q |
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||| | ||||||| ||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
18235332 |
cgagtgcttggaagacgtatcaccatgctttctggtggtgttctttttcttgctggtgctgccatgaatggctttgctcaagaggtttggatgctcattg |
18235233 |
T |
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| Q |
238 |
ttggtcgcatgt |
249 |
Q |
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||||||| |||| |
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| T |
18235232 |
ttggtcgtatgt |
18235221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 41972595 - 41972462
Alignment:
| Q |
75 |
ttgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggag |
174 |
Q |
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|||||||| ||||||||||||||||| |||||||| | || ||||| |||||||| |||||| || |||||||| ||||| |||||| | ||||| | |
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| T |
41972595 |
ttgtttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctggtg |
41972496 |
T |
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| Q |
175 |
gtgtgctttttcttgctggtgctgccttgaatgg |
208 |
Q |
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|||| |||||||| ||||| ||||| ||||||| |
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| T |
41972495 |
gtgttctttttctcgctggagctgctatgaatgg |
41972462 |
T |
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