View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_13 (Length: 262)
Name: NF2139_low_13
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_13 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 36933101 - 36933289
Alignment:
| Q |
20 |
atatttgctagtattaccataccctacaaaattcaatcagctaagagcaagattatcaactatatttcatctaaaaaagattagcaactatcctatagta |
119 |
Q |
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| T |
36933101 |
atatttgctagtattaccataccctacaaaattcaatcagctaagagcaagattatcaactatatttcatctaaaaaagattagcaactatcctatagta |
36933200 |
T |
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| Q |
120 |
tctgaagtttcagttcatgattttgat-tttgagtcatcatctatatctgga-----gtagtgtgtgtccaatgcttgtttcatgtgat |
202 |
Q |
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| T |
36933201 |
tctgaagtttcagttcatgattttgatctttgagtcatcatctatatatggagtagtgtagtgtgtgtccaatgcttgtttcatgtgat |
36933289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 36933344 - 36933376
Alignment:
| Q |
216 |
gtacacaacctttactcatgatcattttgtctt |
248 |
Q |
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| T |
36933344 |
gtacacaacctttactcatgatcattttgtctt |
36933376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 1029990 - 1029943
Alignment:
| Q |
131 |
agttcatgattttgat-tttgagtcatcatctatatctggagtagtgt |
177 |
Q |
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| T |
1029990 |
agttcatcattttgatctttgagtcatcatctatatctggagtagtgt |
1029943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 20798 - 20768
Alignment:
| Q |
147 |
tttgagtcatcatctatatctggagtagtgt |
177 |
Q |
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| T |
20798 |
tttgagtcatcatctatatctggagtagtgt |
20768 |
T |
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