View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2139_low_15 (Length: 247)
Name: NF2139_low_15
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 23087288 - 23087136
Alignment:
| Q |
11 |
atatctccaatttcattatcatcatatac---catacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087288 |
atatctccaatttcattatcatcatctactaccatacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat |
23087189 |
T |
|
| Q |
108 |
tagtctagaagtaaaacagcaaaacataaaacttacaattaaacaacaaaaca |
160 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087188 |
tagtctagaagtaatacagcaaaacataaaacttacaattaaacaacaaaaca |
23087136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 23087124 - 23087088
Alignment:
| Q |
211 |
gtaaactttaaaacttgtaaatggtataagagaactt |
247 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
23087124 |
gtaaattttaaaacttgtaaatggaataagagaactt |
23087088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 24022849 - 24022785
Alignment:
| Q |
60 |
atgtgcttggagtcagatttgcagatctgtaattcaagaaatatccattagtctagaagtaaaaca |
125 |
Q |
| |
|
||||||||||||| | ||||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24022849 |
atgtgcttggagttggtcttgcagacctataattcaa-aaatatccattagtctagaagtaaaaca |
24022785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 11338232 - 11338281
Alignment:
| Q |
89 |
taattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac |
139 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
11338232 |
taattcaa-aaatatccataagactagaagtaaaacaacaaaacataaaac |
11338281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 11356785 - 11356844
Alignment:
| Q |
79 |
tgcagatctgtaattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac |
139 |
Q |
| |
|
|||||| || |||||||| ||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11356785 |
tgcagacctataattcaa-aaatatcaattaggttagaagtaaaacaacaaaacataaaac |
11356844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University