View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_16 (Length: 240)
Name: NF2139_low_16
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_16 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 19223055 - 19223195
Alignment:
| Q |
20 |
tgacatctaatgtagtt-ataaagatattttccaaaatgtactttaattttttaatgaactgtttgattttcaaatataaaaattaatgtttgtcgcatt |
118 |
Q |
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| T |
19223055 |
tgacatctaatgtagtttataaagaaattttttaaaatgtactttaattttttaatgaactgtttgactttcttatataaaaattcatgtatgtcgcatt |
19223154 |
T |
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| Q |
119 |
gatcaatgatgaataatattctagaatgatttatttttcaaatt |
162 |
Q |
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| T |
19223155 |
gatcaatgat---acatatactagaatgatttatttttcaaatt |
19223195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 28322305 - 28322243
Alignment:
| Q |
97 |
aaaaattaatgtttgtcgcattgatcaatgatgaataatattctagaatgatttatttttcaa |
159 |
Q |
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| T |
28322305 |
aaaaattcatgtatgtcacattgatcaatgatacatgatattctagaatgacttatttttcaa |
28322243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 38861802 - 38861694
Alignment:
| Q |
51 |
caaaatgtactttaattttttaatgaactgtttgattttcaaatataaaaa-ttaatgtttgtcgcattgatcaatgatgaataatattctagaatgatt |
149 |
Q |
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| T |
38861802 |
caaaatgtactttgattttttgtttaactgtttgactttcttataaaaaaaattcatgtatgtcacattgatcaatgatacatgatatcctagaatgact |
38861703 |
T |
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| Q |
150 |
tatttttca |
158 |
Q |
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| T |
38861702 |
tatttttca |
38861694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 3451332 - 3451386
Alignment:
| Q |
105 |
atgtttgtcgcattgatcaatgatgaataatattctagaatgatttatttttcaa |
159 |
Q |
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| T |
3451332 |
atgtatgtcacattgatcaatgatacatgatattatagaatgatttatttttcaa |
3451386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 45095 - 45203
Alignment:
| Q |
51 |
caaaatgtactttaattttttaatgaactgtttgattttcaaatataaaaa-ttaatgtttgtcgcattgatcaatgatgaataatattctagaatgatt |
149 |
Q |
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| T |
45095 |
caaaatgtactttgattttttgtttaactgtttgactttcttataaaaaaaattcatgtatgtcacattgatcaatgatacatgatatcctaaaatgact |
45194 |
T |
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| Q |
150 |
tatttttca |
158 |
Q |
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| T |
45195 |
taattttca |
45203 |
T |
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