View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_17 (Length: 240)
Name: NF2139_low_17
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10945066 - 10945305
Alignment:
| Q |
1 |
cataggttattattatccaatcctagaattgaaggtaatagtagaatctgatttgacttgatgcaaactcatatcaatatatgaattccataaacaaatg |
100 |
Q |
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| T |
10945066 |
cataggttattattatccaatcctagaattgaaggtaatagtagaatctgatttgacttgatgcaaactcatatcaatatatgaattccataaacaaatg |
10945165 |
T |
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| Q |
101 |
tcatagtacgtagaacaatgtaaggaagtatctacattaacaaactcatatcatagaggagagacatatgcacacagaatttgaggtttcaaactgaaag |
200 |
Q |
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| T |
10945166 |
tcatagtacgtagaacaatgtaaggaagtatctacatcaacaaactcatatcatagaggagagacatatgcacacagaatttgaggtttcaaactgaaag |
10945265 |
T |
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| Q |
201 |
ggaaaactatgtgctggagtcagatttttgtatataaact |
240 |
Q |
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| T |
10945266 |
ggaaaactatgtgctggagtcagatttttgtatataaact |
10945305 |
T |
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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30733481 - 30733333
Alignment:
| Q |
1 |
cataggttattattatccaatcctagaattgaaggtaatagtagaatctgatttgacttgatgcaaactcatatcaatatatgaattccataaacaaatg |
100 |
Q |
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| T |
30733481 |
cataggttat-attatccaaacctagaatt-aaggtaatagtggaatctgatttcatatgatgcaaactcatatcaatatatgaattccataaacaaatg |
30733384 |
T |
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| Q |
101 |
tcatagtacgtagaacaatgtaaggaagtatctacattaacaaactcatatcata |
155 |
Q |
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| T |
30733383 |
tcata----gtagaacaatgtaaggaaatatctcctttaacaaactcatatcata |
30733333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 8995483 - 8995420
Alignment:
| Q |
162 |
agacatatgcacacagaa-tttgaggtttcaaactgaaagggaaaactatgtgctggagtcaga |
224 |
Q |
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| T |
8995483 |
agacatatgcacatggaaatttgaggtttcaaagtgaaagggaaaactatgtgctggagtcaga |
8995420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 30733181 - 30733133
Alignment:
| Q |
185 |
ggtttcaaactgaaagggaaaactatgtgctggagtcagatttttgtat |
233 |
Q |
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| T |
30733181 |
ggtttcaaagtgaaagggaaaactatgcgctggagtcagatttttgtat |
30733133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 8973894 - 8973820
Alignment:
| Q |
151 |
tcatagaggagagacatatgcacacagaattt-gaggtttcaaactgaaagggaaaactatgtgctggagtcaga |
224 |
Q |
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| T |
8973894 |
tcatataggacagacatatgcacctagaaattcgaggtttcagagtgaaagtgaaaactatgtgctggagtcaga |
8973820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 8984352 - 8984309
Alignment:
| Q |
178 |
aatttgaggtttcaaactgaaagggaaaactatgtgctggagtc |
221 |
Q |
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| T |
8984352 |
aatttgaggtttcaaagtgatagtgaaaactatgtgctggagtc |
8984309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 14667723 - 14667866
Alignment:
| Q |
1 |
cataggttattattatccaatcctagaattgaaggtaatagtagaatctgatttgacttgatgcaaactcatatcaatatatgaattccataaacaaatg |
100 |
Q |
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| T |
14667723 |
cataggttat-attatccaatcctagaatt-aaggtaatagtggaatctgatttcatatgatgcaaactcatatcaatatatgaattccat----aaatg |
14667816 |
T |
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| Q |
101 |
tcatagtacgtagaacaatgtaaggaagtatctacattaacaaactcatatcat |
154 |
Q |
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|||| |||||||||||||||||| ||||| | |||||| ||||||||||| |
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| T |
14667817 |
ccata----gtagaacaatgtaaggaaatatctcctttaacacactcatatcat |
14667866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 14686231 - 14686152
Alignment:
| Q |
154 |
tagaggagagacatatgcacacagaatttgaggtttcaaactgaaagggaaaactatgtgctggagtcagatttttgtat |
233 |
Q |
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| T |
14686231 |
tagagtagagacatatgcacatagaatttgaggtttcaaagtgaaagtgaaaactatgtgctagagtcagatttttgtat |
14686152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 14668013 - 14668067
Alignment:
| Q |
179 |
atttgaggtttcaaactgaaagggaaaactatgtgctggagtcagatttttgtat |
233 |
Q |
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|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
14668013 |
attttaggtttcaaagtgaaagggaaaactatgcgctggagtcagatttttgtat |
14668067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 14681134 - 14681065
Alignment:
| Q |
80 |
tatgaattccataaacaaatgtcatagtacgtagaacaatgtaaggaagtatctacattaacaaactcatatca |
153 |
Q |
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| T |
14681134 |
tatgaattccataaacaaatgtcata----gtagaacaatgtaaggtagtacctcctttaacaaactcatatca |
14681065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14686446 - 14686409
Alignment:
| Q |
1 |
cataggttattattatccaatcctagaattgaaggtaa |
38 |
Q |
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| T |
14686446 |
cataggttattattatccaaccctagaattgagggtaa |
14686409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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