View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2139_low_2 (Length: 483)

Name: NF2139_low_2
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2139_low_2
NF2139_low_2
[»] scaffold0002 (1 HSPs)
scaffold0002 (106-327)||(483856-484076)
[»] chr2 (6 HSPs)
chr2 (106-327)||(7688429-7688649)
chr2 (10-87)||(33855869-33855947)
chr2 (368-414)||(23875170-23875216)
chr2 (373-416)||(40757898-40757941)
chr2 (401-463)||(40727828-40727890)
chr2 (237-270)||(13805233-13805266)
[»] chr6 (1 HSPs)
chr6 (106-370)||(2947459-2947723)
[»] scaffold0057 (1 HSPs)
scaffold0057 (106-327)||(78397-78617)
[»] chr5 (5 HSPs)
chr5 (106-327)||(33260168-33260388)
chr5 (10-90)||(20626074-20626155)
chr5 (20-87)||(23361531-23361598)
chr5 (20-87)||(16511164-16511231)
chr5 (21-85)||(17468963-17469028)
[»] chr1 (10 HSPs)
chr1 (106-327)||(21873191-21873411)
chr1 (106-327)||(6191509-6191729)
chr1 (10-87)||(19883047-19883125)
chr1 (20-87)||(15877862-15877930)
chr1 (9-79)||(26780344-26780416)
chr1 (372-416)||(36153902-36153946)
chr1 (21-85)||(15244352-15244417)
chr1 (426-463)||(51976144-51976181)
chr1 (20-83)||(21501991-21502054)
chr1 (20-87)||(39440514-39440582)
[»] chr3 (4 HSPs)
chr3 (106-373)||(9009037-9009306)
chr3 (20-90)||(4287752-4287823)
chr3 (10-87)||(33797729-33797807)
chr3 (381-466)||(44687727-44687812)
[»] chr7 (7 HSPs)
chr7 (106-327)||(16434884-16435104)
chr7 (12-87)||(5057085-5057161)
chr7 (12-90)||(7228705-7228783)
chr7 (20-87)||(23103735-23103803)
chr7 (20-87)||(45956714-45956782)
chr7 (374-416)||(5063323-5063365)
chr7 (15-87)||(16253131-16253204)
[»] chr4 (7 HSPs)
chr4 (193-373)||(25028263-25028449)
chr4 (195-373)||(25034302-25034487)
chr4 (10-87)||(20570543-20570621)
chr4 (10-87)||(51461638-51461716)
chr4 (15-87)||(5066873-5066946)
chr4 (12-87)||(11489332-11489408)
chr4 (24-84)||(19940927-19940988)
[»] chr8 (6 HSPs)
chr8 (9-87)||(37379001-37379080)
chr8 (18-87)||(22541638-22541708)
chr8 (12-85)||(16072880-16072953)
chr8 (10-87)||(25233748-25233826)
chr8 (53-86)||(25988915-25988948)
chr8 (388-420)||(32574810-32574842)
[»] scaffold0051 (1 HSPs)
scaffold0051 (381-422)||(15059-15100)


Alignment Details
Target: scaffold0002 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 483856 - 484076
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  483856 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 483954  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  483955 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 484054  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  484055 acagatacaagtccgttcaaaa 484076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 7688429 - 7688649
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  7688429 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 7688527  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7688528 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 7688627  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  7688628 acagatacaagtccgttcaaaa 7688649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 33855869 - 33855947
Alignment:
Q  10 agatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||| |||||||||||||||||||||||||| |||||||| | |||||| |||||| |||||||||||||||||||||    
T  33855869 agatggagataaacataaatgaaaacatgaaaagctaaattgatagattagatagagctagtacaagattacaatcctt 33855947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 23875170 - 23875216
Alignment:
Q  368 aaacatggtggcatttagcctgggaatgagaagttttttcccaccat 414  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  23875170 aaacaaggtggcatttagccttggaatgagaagttttttcccaccat 23875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 40757941 - 40757898
Alignment:
Q  373 tggtggcatttagcctgggaatgagaagttttttcccaccatgg 416  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  40757941 tggtggcatttagtctgggaatgagaagtttttttccaccatgg 40757898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 463
Target Start/End: Complemental strand, 40727890 - 40727828
Alignment:
Q  401 ttttttcccaccatggtaaaatcccttttttccaggcaggtggcagttgctgcaggttgtgaa 463  Q
    |||||||||||||| | ||| |  |||||||||||||| |||||||||||| |||||||||||    
T  40727890 ttttttcccaccatagaaaagtgacttttttccaggcacgtggcagttgctacaggttgtgaa 40727828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 13805233 - 13805266
Alignment:
Q  237 aaaatcaattgaaaaagttatctcaactgcagaa 270  Q
    |||| |||||||||||||||||||||||||||||    
T  13805233 aaaagcaattgaaaaagttatctcaactgcagaa 13805266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 106 - 370
Target Start/End: Original strand, 2947459 - 2947723
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    |||||||||||||||||||||||||||||||| ||||||||| |       |||||||||||||||||||| ||||||||  ||||||||||||||| ||    
T  2947459 tccacagcaaaatcatcattgtaaatatgctaggcttcagctacaaaaag-catctcatttcatctcagtcgtaagcaccggcaatgtctcatctcaacc 2947557  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  2947558 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaact-cataaaagcacttgacacaccaaaaccaccacacattaag 2947656  T
Q  306 atagatacaagtccattcaaaattcta--ctctctacaaatgtcaaattatgagattggctttgaaa 370  Q
    | |||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  2947657 acagatacaagttcgttcaaaattctactctctctacaaatgtcaaattatgagattggctgtgaaa 2947723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 78397 - 78617
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| ||||||||||||||||||     
T  78397 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagca 78495  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  78496 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 78595  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  78596 acagatacaagtccgttcaaaa 78617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 33260168 - 33260388
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  33260168 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 33260266  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33260267 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 33260366  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  33260367 acagatacaagtccgttcaaaa 33260388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 20626155 - 20626074
Alignment:
Q  10 agatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatccttaaa 90  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||    
T  20626155 agatgaagataaacataaatgaaaacatgaaaagttaaattaaaagattaaatagagttagtacaagattacagtccttaaa 20626074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 23361598 - 23361531
Alignment:
Q  20 aaacataaatgaaaacatgaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||||||||||||||| ||||||| | |||| ||||| || |||||||||||||||||||||    
T  23361598 aaacataaatgaaaacatgaaaactaaattgatagatgaaatatagctagtacaagattacaatcctt 23361531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 16511231 - 16511164
Alignment:
Q  20 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||||||||||||||| |||||||| | |||| ||||| || |||||||||||||||||||||    
T  16511231 aaacataaatgaaaacatgaaaagctaaattgatagat-aaataaagctagtacaagattacaatcctt 16511164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 17469028 - 17468963
Alignment:
Q  21 aacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcc 85  Q
    |||||||||||||||||| ||| ||||||||| | || |||||||| |||||  ||||||||||||    
T  17469028 aacataaatgaaaacatgaaaaactaaattaatatataaaatagagctagtaatagattacaatcc 17468963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 106 - 327
Target Start/End: Original strand, 21873191 - 21873411
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  21873191 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 21873289  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21873290 acatcataatcaattttcatctacaaaaaacaaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 21873389  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  21873390 acagatacaagtccgttcaaaa 21873411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 6191729 - 6191509
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  6191729 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagtcgtaagcaccgacaatgtctcatctcagcc 6191631  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6191630 acatcataatcaattttcatctacaaaaaacaaatgcaattgacaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 6191531  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  6191530 acagatacaagtccgttcaaaa 6191509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 19883047 - 19883125
Alignment:
Q  10 agatgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||| ||||| |||||||||||||| |||| ||||||| | |||| |||||||| |||||||| ||||||||||||    
T  19883047 agatgaaaataaaaataaatgaaaacatagaaaactaaattgatagatcaaatagagctagtacaaaattacaatcctt 19883125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 15877930 - 15877862
Alignment:
Q  20 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||||||||||| |||||| |||||||||| ||||| | ||||  |||||||||||||||||||||    
T  15877930 aaacataaatgaaaatatgaaaagctaaattaatagattgagtagatctagtacaagattacaatcctt 15877862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 26780344 - 26780416
Alignment:
Q  9 gagatgaagataaacataaatgaaaacatg--aaagctaaattaaaagattaaatagagttagtacaagatta 79  Q
    |||||||| |||||||||||||||| ||||  ||| ||||||| | ||||||||||||| |||||||| ||||    
T  26780344 gagatgaaaataaacataaatgaaagcatgaaaaaactaaattgatagattaaatagagctagtacaaaatta 26780416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 36153946 - 36153902
Alignment:
Q  372 atggtggcatttagcctgggaatgagaagttttttcccaccatgg 416  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  36153946 atggtggcatttagcctgggaatagggagttttttcccaccatgg 36153902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 15244417 - 15244352
Alignment:
Q  21 aacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcc 85  Q
    |||||||||||||||||| ||| ||||||| | |||| ||||| ||||| || |||||||||||||    
T  15244417 aacataaatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagattacaatcc 15244352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 51976181 - 51976144
Alignment:
Q  426 ttttttccaggcaggtggcagttgctgcaggttgtgaa 463  Q
    |||||||||||||||||||||||||||||  |||||||    
T  51976181 ttttttccaggcaggtggcagttgctgcaatttgtgaa 51976144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 21502054 - 21501991
Alignment:
Q  20 aaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaat 83  Q
    ||||||||||||||||||| |||| |||||||| ||| |||||| || |||||||| ||||||||    
T  21502054 aaacataaatgaaaacatgaaaagttaaattaataga-taaatatagctagtacaatattacaat 21501991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 39440514 - 39440582
Alignment:
Q  20 aaacataaatgaaaacatgaaag-ctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||| |||||||||||  ||||||| | | || ||||| || |||||||||||||||||||||    
T  39440514 aaacataaataaaaacatgaaaaactaaattgatatataaaataaagctagtacaagattacaatcctt 39440582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 106 - 373
Target Start/End: Original strand, 9009037 - 9009306
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||       |||||||| ||||||||||| |||||||| ||||| |||||||||||||    
T  9009037 tccacagcagaatcatcattgtaaatatgctaagcttcaactgcaaaaag-catctcatctcatctcagtcataagcaccgacaatatctcatctcagcc 9009135  T
Q  206 acatcataatcaatttt-caactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaa 304  Q
    ||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |    
T  9009136 acatcataatcaatttttcaactgcaaaaaacaaaatcagttgaaaaagttatctcaactacagaaacgcacttgatacaccaaaaccaccacgcattga 9009235  T
Q  305 gatagatacaagtccattcaaaattctactc--tctacaaatgtcaaattatgagattggctttgaaacat 373  Q
    || || ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9009236 gacagctacaagtccgttcaaaattctactctttctacaaatgtcaaattatgagattggctttgaaacat 9009306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4287752 - 4287823
Alignment:
Q  20 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatccttaaa 90  Q
    |||||||||  ||||||||||| |||||||||| ||||| |||| || ||||||||||||||||||||||||    
T  4287752 aaacataaacaaaaacatgaaaagctaaattaatagatttaataaagctagtacaagattacaatccttaaa 4287823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 33797807 - 33797729
Alignment:
Q  10 agatgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||  |||| |||||||||||||| ||||  |||||| | ||||||||||||||||||| |||||||||||||||    
T  33797807 agatgaaattaaaaataaatgaaaacatagaaaagtaaattgatagattaaatagagttagtataagattacaatcctt 33797729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 44687727 - 44687812
Alignment:
Q  381 tttagcctgggaatgagaagttttttcccaccatggtaaaatcccttttttccaggcaggtggcagttgctgcaggttgtgaatac 466  Q
    |||| ||||||||||  ||||||||| || | |||| ||| | || |||||||||  ||||||||||||||||| |||||||||||    
T  44687727 tttaacctgggaatggaaagtttttttcctctatggaaaagtgccatttttccagataggtggcagttgctgcaagttgtgaatac 44687812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 106 - 327
Target Start/End: Complemental strand, 16435104 - 16434884
Alignment:
Q  106 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcnnnnnnncatctcatttcatctcagtcttaagcaccaacaatgtctcatctcagcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | |||||||| |||||||||||||||||||    
T  16435104 tccacagcaaaatcatcattgtaaatatgctaagcttcagctgcaaaaag-catctcatttcatctcagacgtaagcaccgacaatgtctcatctcagcc 16435006  T
Q  206 acatcataatcaattttcaactacaaaaaccaaaatcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaaaccaccacacattaag 305  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16435005 acatcataatcaattttcatctacaaaaaataaaatcaattgaaaaagttatctcaactgcataaacgcacttgacacaccaaaaccaccacacattaag 16434906  T
Q  306 atagatacaagtccattcaaaa 327  Q
    | |||||||||||| |||||||    
T  16434905 acagatacaagtccgttcaaaa 16434884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5057085 - 5057161
Alignment:
Q  12 atgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||| |||||||||||||||||||| |||| ||||||| | |||||||||| |||||| |||||||||||||||||    
T  5057085 atgaatataaacataaatgaaaacatagaaaactaaattgatagattaaatatagttaggacaagattacaatcctt 5057161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 7228783 - 7228705
Alignment:
Q  12 atgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatccttaaa 90  Q
    ||||||||||||||||||||||||||| |||| |||||  | |||||||| |||| ||||||||||||||||||||||||    
T  7228783 atgaagataaacataaatgaaaacatgaaaagttaaatcgatagattaaa-agaggtagtacaagattacaatccttaaa 7228705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 23103803 - 23103735
Alignment:
Q  20 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||||||||||| ||| |||||| ||| ||||| ||||||| |||||||||||||||||||||    
T  23103803 aaacataaatgaaaacataaaaagctaaagtaatagattgaatagagctagtacaagattacaatcctt 23103735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 45956782 - 45956714
Alignment:
Q  20 aaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||| ||||||||||| |||||||| | |||||||||||| |||||||||| |||||||||||    
T  45956782 aaacataaataaaaacatgaaaagctaaattgatagattaaatagaattagtacaaggttacaatcctt 45956714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 5063323 - 5063365
Alignment:
Q  374 ggtggcatttagcctgggaatgagaagttttttcccaccatgg 416  Q
    ||||||||||||||||| |||| || |||||||||||||||||    
T  5063323 ggtggcatttagcctggaaatgggatgttttttcccaccatgg 5063365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 16253204 - 16253131
Alignment:
Q  15 aagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||| ||||||||||||||||| |||| ||||||| | |||||| ||||||||   | |||||||||||||||    
T  16253204 aagatgaacataaatgaaaacatagaaaactaaattgatagattagatagagttgtcataagattacaatcctt 16253131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 373
Target Start/End: Original strand, 25028263 - 25028449
Alignment:
Q  193 tctcatctcagccacatcataatcaattttcaactacaaaaaccaaaa----tcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaa 288  Q
    ||||||||||||||||||| ||| |||||||  || ||||||  ||||    ||||||||| ||| |||||||| | ||||||  ||||| ||||||  |    
T  25028263 tctcatctcagccacatcagaataaattttccgctgcaaaaaaaaaaaaatatcaattgaacaagctatctcaattacagaaagacacttcacacacaca 25028362  T
Q  289 aaccaccacacattaagatagatacaagtccattcaaaattcta--ctctctacaaatgtcaaattatgagattggctttgaaacat 373  Q
    |||||||||||||||||| |  ||||||||  ||||||||||||  |||| ||||||||||||||| |||||||| |||||||||||    
T  25028363 aaccaccacacattaagacaactacaagtctgttcaaaattctaatctctatacaaatgtcaaattttgagattgactttgaaacat 25028449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 373
Target Start/End: Complemental strand, 25034487 - 25034302
Alignment:
Q  195 tcatctcagccacatcataatcaattttcaactacaaaaaccaaaa-----tcaattgaaaaagttatctcaactgcagaaacgcacttgacacaccaaa 289  Q
    ||||||||||||||||| ||| |||||||| || ||||||  ||||     |||||| |||||| |||   |||| ||||||| ||||| ||||||| ||    
T  25034487 tcatctcagccacatcagaataaattttcagctgcaaaaaaaaaaaaaaaatcaattaaaaaagctatagaaactacagaaacacacttcacacacccaa 25034388  T
Q  290 accaccacacattaagatagatacaagtccattcaaaattcta--ctctctacaaatgtcaaattatgagattggctttgaaacat 373  Q
    | |||||| |||||||| |  ||||||||  ||||||||||||  |||||||||||||||||||| |||||||| | |||||||||    
T  25034387 atcaccactcattaagacaactacaagtctgttcaaaattctaatctctctacaaatgtcaaattctgagattgacattgaaacat 25034302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 20570621 - 20570543
Alignment:
Q  10 agatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||| ||||||||||||||||||||| ||||  ||||| |  ||||||| |||| |||||||||||||||||||||    
T  20570621 agatgaatataaacataaatgaaaacatgaaaagtgaaattgattgattaaaaagagctagtacaagattacaatcctt 20570543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 51461716 - 51461638
Alignment:
Q  10 agatgaagataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||||  |||||||||||||||||||||| |||||||||| ||||||||||  | | |||||| ||||||||||||    
T  51461716 agatgaaggaaaacataaatgaaaacatgaaaagctaaattaatagattaaataatgattgtacaatattacaatcctt 51461638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 5066946 - 5066873
Alignment:
Q  15 aagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||||||||||| ||||||| |||| ||||||| | |||||||||||||||||  || |||||||||||||    
T  5066946 aagataaacataaatcaaaacatagaaaactaaattgatagattaaatagagttagctcatgattacaatcctt 5066873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 11489332 - 11489408
Alignment:
Q  12 atgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||| |||||||||||||| ||| ||| ||||||| | |||| ||||| |||||| |||||||||||||||||    
T  11489332 atgaagatgaacataaatgaaaatatggaaaactaaattgatagatcaaatacagttagcacaagattacaatcctt 11489408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 19940927 - 19940988
Alignment:
Q  24 ataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatc 84  Q
    |||||||||||||||||| |||||||| | |||| |||||||||  ||||||||||||||||    
T  19940927 ataaatgaaaacatgaaaagctaaattgagagataaaatagagtatgtacaagattacaatc 19940988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 37379001 - 37379080
Alignment:
Q  9 gagatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||| |||||||||| | |||||||| ||| ||||||| | ||||||||||||| |||||||||||||||||||||    
T  37379001 gagatgaaaataaacataagtaaaaacatggaaaactaaattgatagattaaatagagctagtacaagattacaatcctt 37379080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 22541708 - 22541638
Alignment:
Q  18 ataaacataaatgaaaacatgaaa-gctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    |||||||||||||||||||||||| |||||| | | |||||||||||||  ||||||||||||| ||||||    
T  22541708 ataaacataaatgaaaacatgaaaagctaaactgatagattaaatagagccagtacaagattacgatcctt 22541638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 16072953 - 16072880
Alignment:
Q  12 atgaagataaacataaatgaaaacat-gaaagctaaattaaaagattaaatagagttagtacaagattacaatcc 85  Q
    |||||||| |||||||||| |||||| |||| ||||||| | ||||||||||||||||| ||||| |||||||||    
T  16072953 atgaagatgaacataaatggaaacatagaaaactaaattgatagattaaatagagttagcacaag-ttacaatcc 16072880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 25233826 - 25233748
Alignment:
Q  10 agatgaagataaacataaatgaaaacatg-aaagctaaattaaaagattaaatagagttagtacaagattacaatcctt 87  Q
    ||||||| ||||||||||||||||| ||| ||| ||||||| | | |||||||| || ||||||| |||||||||||||    
T  25233826 agatgaaaataaacataaatgaaaagatgaaaaactaaattgatatattaaataaagctagtacatgattacaatcctt 25233748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 25988948 - 25988915
Alignment:
Q  53 agattaaatagagttagtacaagattacaatcct 86  Q
    ||||||||||||||||||||||||||||||||||    
T  25988948 agattaaatagagttagtacaagattacaatcct 25988915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 32574842 - 32574810
Alignment:
Q  388 tgggaatgagaagttttttcccaccatggtaaa 420  Q
    ||||||||||||||| |||||||||||||||||    
T  32574842 tgggaatgagaagttgtttcccaccatggtaaa 32574810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 15100 - 15059
Alignment:
Q  381 tttagcctgggaatgagaagttttttcccaccatggtaaaat 422  Q
    |||||| ||||||||||||||| ||||||||||||| |||||    
T  15100 tttagcatgggaatgagaagttctttcccaccatgggaaaat 15059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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