View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2139_low_20 (Length: 214)

Name: NF2139_low_20
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2139_low_20
NF2139_low_20
[»] chr5 (1 HSPs)
chr5 (12-195)||(23086575-23086758)
[»] chr7 (5 HSPs)
chr7 (57-138)||(26256625-26256706)
chr7 (62-133)||(26217822-26217893)
chr7 (62-133)||(26230072-26230143)
chr7 (57-138)||(26237464-26237545)
chr7 (57-156)||(24016621-24016719)
[»] chr3 (3 HSPs)
chr3 (12-127)||(36339976-36340091)
chr3 (57-127)||(25915436-25915506)
chr3 (57-127)||(25901418-25901488)
[»] chr6 (2 HSPs)
chr6 (12-138)||(19746788-19746914)
chr6 (57-133)||(33568839-33568915)
[»] chr1 (1 HSPs)
chr1 (57-118)||(17953800-17953861)
[»] scaffold0707 (1 HSPs)
scaffold0707 (57-133)||(5233-5309)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 23086758 - 23086575
Alignment:
Q  12 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23086758 aagcaaaggcagtccttcagaacatgaagagatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgata 23086659  T
Q  112 gatcaagcgaaacaatgacaaactgcttagcattagtgatagacttccaaccatgttcataagacggcataaggaaatcgggga 195  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23086658 gatcaagcgaaacaatgacaaactgcttagcattagtaatagacttccaaccatgttcataagacggcataaggaaatcgggga 23086575  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 26256706 - 26256625
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  26256706 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgct 26256625  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 26217893 - 26217822
Alignment:
Q  62 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26217893 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26217822  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 26230143 - 26230072
Alignment:
Q  62 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 133  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26230143 ctcatcaaagccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26230072  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 26237545 - 26237464
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 138  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||  || |||||||||||||||| ||| ||||| ||||    
T  26237545 ggcacctcatcaaaaccttgaggcaacaacaactgtttgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgct 26237464  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 24016719 - 24016621
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgcttagcattagtgatagact 156  Q
    |||||||| ||||| ||||||| |||||  |||||||||||||||||||| ||||||||||| |||||||| ||||| || ||| |||| || |||||||    
T  24016719 ggcacctcgtcaaatccttgag-cagcagaaactgcttgtatgtctccgtcgaaagatcaagagaaacaatcacaaattgtttaacattggtaatagact 24016621  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 36340091 - 36339976
Alignment:
Q  12 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 111  Q
    ||||||||||||||| |||||||  |||||||||||| |      |||||||| | |||||||  ||| ||||| |||||| ||||||||||||| ||||    
T  36340091 aagcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaa 36339992  T
Q  112 gatcaagcgaaacaat 127  Q
    ||||||||||||||||    
T  36339991 gatcaagcgaaacaat 36339976  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 25915436 - 25915506
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 127  Q
    |||||||| ||||||||  ||||||||||||||||  |||||| ||| || || |||||||||||||||||    
T  25915436 ggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25915506  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 25901418 - 25901488
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 127  Q
    |||||||| ||||||||  |||| |||||||||||  |||||| ||| || || |||||||||||||||||    
T  25901418 ggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25901488  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 19746788 - 19746914
Alignment:
Q  12 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 111  Q
    ||||||||||||||| ||||||||||||||| ||||||| | |  || || |||||||||||    |||||||| || ||  |||||||||| || ||||    
T  19746788 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaa 19746887  T
Q  112 gatcaagcgaaacaatgacaaactgct 138  Q
    ||||||| |||||||| ||||| ||||    
T  19746888 gatcaagggaaacaatcacaaattgct 19746914  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 33568915 - 33568839
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 133  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 33568839  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 17953800 - 17953861
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaag 118  Q
    |||||||||||||||||||||||||| |||| || |||| ||||||| || |||||||||||    
T  17953800 ggcacctcatcaaaaccttgaggcagtaacagcttcttgaatgtctctgtcgaaagatcaag 17953861  T

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Target: scaffold0707 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 5309 - 5233
Alignment:
Q  57 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 133  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 5233  T

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