View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2139_low_3 (Length: 476)
Name: NF2139_low_3
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 9402785 - 9402342
Alignment:
| Q |
19 |
ggggaagcaacgacgtccaaactagatttagatttttatttctattcatgctagaaatgtggttaataatatgcaatttaacgattaataaagtagtcaa |
118 |
Q |
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| T |
9402785 |
ggggaagcaacgacatccaaactagatttagatttttatttctattcatgctaaaaatgtggttaataatatacaatttaacgattaataaagtagtcaa |
9402686 |
T |
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| Q |
119 |
attagnnnnnnn----gaaggaaaagtagtcaaattagttaattacgccactcaatttttgtgtgataaaagttctcctctatatttnnnnnnnnnnnnn |
214 |
Q |
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| T |
9402685 |
attagtttttttttttgaaggaaaagtagtcaaattagttaattacgccactcaatttttgtgtgataaaagttctcctctatatttaaaaaataaaagt |
9402586 |
T |
|
| Q |
215 |
nnnnnngtattgcacaccgtaaatactttatacggttaacaatgtagatgtactgtatttgtgtcaattatgtgtgttcaaccatcatttttaaacttgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9402585 |
aaaaaagtattgcacaccgtaaatactttatacggttaacaatgtagatgtactgtatttgtgtcaattatgtgtgttcaaccatcatttttaaacttgg |
9402486 |
T |
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| Q |
315 |
taactggattcttcaaaagagccccaaaaaagcaaattgagattgaactcatcccttcagtttccacgtaaatagaaataatgacaagtatacatataat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
9402485 |
taactggattcttcaaaagagccccaaaaaagcaaattgagattgaactcatcccttcagtttccatgtaaatagaaataataacaagtatacatataat |
9402386 |
T |
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| Q |
415 |
tcttgatccatannnnnnnattacaagttccactaataaaatga |
458 |
Q |
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|||| |||||| || |||||||||||||||||||||| |
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| T |
9402385 |
tcttattccatatttttttatcacaagttccactaataaaatga |
9402342 |
T |
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