View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2139_low_5 (Length: 417)

Name: NF2139_low_5
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2139_low_5
NF2139_low_5
[»] chr4 (16 HSPs)
chr4 (17-184)||(31702553-31702720)
chr4 (243-417)||(31702319-31702493)
chr4 (245-417)||(31717649-31717821)
chr4 (245-417)||(31724874-31725046)
chr4 (17-181)||(31717886-31718050)
chr4 (17-181)||(31725111-31725275)
chr4 (261-405)||(31745959-31746103)
chr4 (261-405)||(31733058-31733202)
chr4 (57-160)||(31708548-31708651)
chr4 (259-417)||(31708208-31708366)
chr4 (55-160)||(31697463-31697568)
chr4 (55-169)||(31733277-31733391)
chr4 (55-169)||(31740833-31740947)
chr4 (259-352)||(31697182-31697275)
chr4 (290-417)||(31740604-31740730)
chr4 (131-169)||(31746178-31746216)
[»] chr8 (4 HSPs)
chr8 (69-170)||(23560260-23560361)
chr8 (96-160)||(15697123-15697187)
chr8 (313-352)||(15799843-15799882)
chr8 (319-352)||(15703721-15703754)
[»] chr1 (3 HSPs)
chr1 (96-169)||(47771228-47771301)
chr1 (99-169)||(21936640-21936710)
chr1 (108-169)||(47775326-47775387)
[»] chr3 (2 HSPs)
chr3 (96-167)||(3080668-3080739)
chr3 (96-167)||(3095105-3095176)
[»] chr2 (1 HSPs)
chr2 (265-378)||(34328911-34329024)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 31702720 - 31702553
Alignment:
17 agcaacaaggttaagagtttgttttgtaatataacactctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgat 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31702720 agcaacaaggttaagagtttgttttttaatataacactctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgat 31702621  T
117 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagccattgtgag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31702620 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagccattgtgag 31702553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 243 - 417
Target Start/End: Complemental strand, 31702493 - 31702319
Alignment:
243 ggttctggatagttaaacactcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgata 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
31702493 ggttctggatagttaaacactcactatgtcccaacaattctatctgtgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgata 31702394  T
343 tttttggatttaaagtatcatctagtaaaacattacctgttttgaaatctctatggacaatccgcaatcgagaat 417  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
31702393 tttttggattcaaagtatcatctagtaaaacattacctgttttgagatctctatggacaatccgcaatcgagaat 31702319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 245 - 417
Target Start/End: Complemental strand, 31717821 - 31717649
Alignment:
245 ttctggatagttaaacactcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatt 344  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31717821 ttctggatagttaaacactcactaagtcccaacaattctatttgtgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatt 31717722  T
345 tttggatttaaagtatcatctagtaaaacattacctgttttgaaatctctatggacaatccgcaatcgagaat 417  Q
    |||||||| ||||||||||||||||||||||| |   |||||| ||||||||||||||||| |||||||||||    
31717721 tttggattcaaagtatcatctagtaaaacattgctgcttttgagatctctatggacaatcctcaatcgagaat 31717649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 245 - 417
Target Start/End: Complemental strand, 31725046 - 31724874
Alignment:
245 ttctggatagttaaacactcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatt 344  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31725046 ttctggatagttaaacactcactacgtcccaacaattctatttgtgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatt 31724947  T
345 tttggatttaaagtatcatctagtaaaacattacctgttttgaaatctctatggacaatccgcaatcgagaat 417  Q
    |||||||| ||||||||||||||||||||||| |   ||||||  |||||||||||||||| |||||||||||    
31724946 tttggattcaaagtatcatctagtaaaacattgctgcttttgaggtctctatggacaatcctcaatcgagaat 31724874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 31718050 - 31717886
Alignment:
17 agcaacaaggttaagagtttgttttgtaatataacactctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgat 116  Q
    ||||||||||||||||||||| ||||||  || |||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||    
31718050 agcaacaaggttaagagtttgctttgtacgatgacacactcgatttttcttgccacatataatctctaacagtaaaataccaaagctgaaaacgtcggat 31717951  T
117 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagccattgt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31717950 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagccattgt 31717886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 31725275 - 31725111
Alignment:
17 agcaacaaggttaagagtttgttttgtaatataacactctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgat 116  Q
    ||||||||||||||||||||| ||||||  || |||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| || |||    
31725275 agcaacaaggttaagagtttgctttgtacgatgacacactcgatttttcttcccacatataatctctaacaataaaataccaaagctgaaaacgtcggat 31725176  T
117 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagccattgt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
31725175 ttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgcaataagacattgt 31725111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 31746103 - 31745959
Alignment:
261 actcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatttaaagtat 360  Q
    |||||||| |||||||  ||||| ||||  |||||||  ||||||| ||||||||||||||||||   |||||||||||||||||||||||| ||| |||    
31746103 actcactaagtcccaattattctttctgtttttcctttgatttggtctcctccaaaagttctagctgttccaaaatctgatatttttggattcaaattat 31746004  T
361 catctagtaaaacattacctgttttgaaatctctatggacaatcc 405  Q
    | || ||||||||||||| || ||||| ||||||||||| |||||    
31746003 cgtcgagtaaaacattacttgctttgagatctctatggataatcc 31745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 31733202 - 31733058
Alignment:
261 actcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatttaaagtat 360  Q
    |||||||| || ||||  ||||| | || ||||||||| | ||||| ||||||||||||||||||   |||||||||||||||||||||||| ||| |||    
31733202 actcactaagttccaattattctctttgtgtttccttcgaattggtctcctccaaaagttctagctgttccaaaatctgatatttttggattcaaattat 31733103  T
361 catctagtaaaacattacctgttttgaaatctctatggacaatcc 405  Q
    | || ||||||||||||| || ||||| ||||||||||| |||||    
31733102 cgtcgagtaaaacattacttgctttgagatctctatggataatcc 31733058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 31708651 - 31708548
Alignment:
57 ctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgcca 156  Q
    |||||||| ||||||| |||||||||||  ||||||| |||||||||||||||||| ||||| |  |||||||||||| |||| ||||||||||||||||    
31708651 ctatttttgttcccacatataatctctagtagtaaaacaccaaagctgaaaacatctgatttgattgaaaattgtccaccaatggcatactctggtgcca 31708552  T
157 tgta 160  Q
    ||||    
31708551 tgta 31708548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 417
Target Start/End: Complemental strand, 31708366 - 31708208
Alignment:
259 acactcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatttaaagt 358  Q
    ||||||||||||| ||||| | ||||| ||  ||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||| || ||  |    
31708366 acactcactatgttccaactactctatgtgtatttccttcaatctggtctcctccaaaagatctagccattccaaaatctgatatttttgggttcaactt 31708267  T
359 atcatctagtaaaacattacctgttttgaaatctctatggacaatccgcaatcgagaat 417  Q
     | ||| |  |||||||||| || ||||| ||||||||| | |||||  ||||||||||    
31708266 gtgatccaacaaaacattacttgctttgagatctctatgaataatccttaatcgagaat 31708208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 31697568 - 31697463
Alignment:
55 ctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgc 154  Q
    |||||||||| ||||| | ||||||||| || ||||||| ||||||||||||||| || ||||| |  |||||||| ||||||| |||||||||||| ||    
31697568 ctctatttttgttcccgcatataatctccaatagtaaaacaccaaagctgaaaacgtctgatttgattgaaaattgcccatcaacagcatactctggagc 31697469  T
155 catgta 160  Q
    ||||||    
31697468 catgta 31697463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 31733391 - 31733277
Alignment:
55 ctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgc 154  Q
    |||||||| | || |||| ||||||||| || | |||||| || ||||| ||||| || |||||||| ||||||  |||||||| |||||| ||||||||    
31733391 ctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacgtcagatttcaccgaaaataatccatcaacagcatattctggtgc 31733292  T
155 catgtacccactgca 169  Q
    |||||||||||||||    
31733291 catgtacccactgca 31733277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 31740947 - 31740833
Alignment:
55 ctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgc 154  Q
    |||||||| | || |||| |||||| ||||||| |||||| |||||||| |||||||| |||||||| |||||   | |||||| ||||||||| |||||    
31740947 ctctatttcttttgccacgtataatttctaacaataaaattccaaagctaaaaacatcagatttcaccgaaaacaattcatcaacagcatactcgggtgc 31740848  T
155 catgtacccactgca 169  Q
    |||||| ||||||||    
31740847 catgtatccactgca 31740833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 31697275 - 31697182
Alignment:
259 acactcactatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatt 352  Q
    ||||| ||||||| ||||| | ||||| ||  ||||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||||||||    
31697275 acacttactatgttccaactactctatttgtatttccttcaatctggtctcctccaaaagatctggccattccaaaatctgatatttttggatt 31697182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 31740730 - 31740604
Alignment:
290 gtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatttaaagtatcatctagtaaaacattacctgttttgaaa 389  Q
    ||||||||| ||||||| |||||| |||||||||||   |||||||||||||| ||||||||| ||  | || || || |||||||||| || |||||      
31740730 gtttccttcgatttggtctcctccgaaagttctagctgttccaaaatctgata-ttttggattcaagttgtcgtcgagcaaaacattacttgctttgagg 31740632  T
390 tctctatggacaatccgcaatcgagaat 417  Q
    |||||||||| ||| |  ||||||||||    
31740631 tctctatggataattcttaatcgagaat 31740604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 31746216 - 31746178
Alignment:
131 tccatcaatagcatactctggtgccatgtacccactgca 169  Q
    |||||||| ||||||||||||||||||||||||||||||    
31746216 tccatcaacagcatactctggtgccatgtacccactgca 31746178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 23560260 - 23560361
Alignment:
69 ccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 168  Q
    |||| ||||||||| | ||  ||||| ||||| ||||| ||||| |||||||| |||||  |||||||   |||||| |||||||||||||| |||||||    
23560260 ccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgc 23560359  T
169 aa 170  Q
    ||    
23560360 aa 23560361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 15697123 - 15697187
Alignment:
96 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgta 160  Q
    ||||||||||||||||| |||||||| ||||||  |||| | |||||||| ||||| ||||||||    
15697123 ccaaagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggagccatgta 15697187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 15799843 - 15799882
Alignment:
313 caaaagttctagccaatccaaaatctgatatttttggatt 352  Q
    |||| ||||| |||||||||||||||||||||||||||||    
15799843 caaatgttcttgccaatccaaaatctgatatttttggatt 15799882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 15703721 - 15703754
Alignment:
319 ttctagccaatccaaaatctgatatttttggatt 352  Q
    |||| |||||||||||||||||||||||||||||    
15703721 ttcttgccaatccaaaatctgatatttttggatt 15703754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 47771301 - 47771228
Alignment:
96 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgca 169  Q
    |||||||| || ||||||||||| || |||||||||||||  || |||||||| ||||||||||| || |||||    
47771301 ccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgca 47771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 21936710 - 21936640
Alignment:
99 aagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgca 169  Q
    ||||| |||||||| || ||||| ||||| ||||||||||  ||||||||||| | |||||| ||||||||    
21936710 aagctaaaaacatcggacttcactgaaaaatgtccatcaagggcatactctggagacatgtaaccactgca 21936640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 47775387 - 47775326
Alignment:
108 acatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgca 169  Q
    ||||||||||| || |||||||||||||  || |||||||| |||||||| || ||||||||    
47775387 acatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatatatccactgca 47775326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 3080739 - 3080668
Alignment:
96 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactg 167  Q
    ||||||||||||||||| |||||||| ||| ||   || || ||||| ||||||||||||||||| ||||||    
3080739 ccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccactg 3080668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 3095176 - 3095105
Alignment:
96 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactg 167  Q
    ||||||||||||||||| |||||||| ||| ||   || || ||||| ||||||||||||||||| ||||||    
3095176 ccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccactg 3095105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 34329024 - 34328911
Alignment:
265 actatgtcccaacaattctatctgcgtttccttcaatttggtttcctccaaaagttctagccaatccaaaatctgatatttttggatttaaagtatcatc 364  Q
    ||||||||||||| |||||   || |||||||||  |||| | |||||| ||| |||||||||  || |||||||| ||||| ||||||||    | |||    
34329024 actatgtcccaactattctccttgtgtttccttccttttgatctcctccgaaaattctagccatgccgaaatctgaaattttaggatttaattcctgatc 34328925  T
365 tagtaaaacattac 378  Q
    ||||||||||||||    
34328924 tagtaaaacattac 34328911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University