View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2139_low_8 (Length: 387)
Name: NF2139_low_8
Description: NF2139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2139_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 35446470 - 35446121
Alignment:
| Q |
23 |
aatggaagaatacaacgggcgggaagagcaaaaacaaagacaaagatcaaaatctgtagaatacgaagcagtgatacgtgctggcccacacattcgacct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35446470 |
aatggaagaatacaacgggcgggaagagcaaaaacaaagacaaagatcaaaatctgtagaatacgaagcagtgatacgtgctggcccacacattcgacct |
35446371 |
T |
|
| Q |
123 |
ctccaacaagctcatgctcatctcattgtctccggtcgtcaccgtagtcgtgcccttctcaccaaactcctcactctctcctccgccgccggttccatcg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35446370 |
ctccaacaagctcatgctcatctcattgtctcaggtcgtcaccgtagtcgtgccctcctcaccaaactcctcactctctcctccgccgccggttccatcg |
35446271 |
T |
|
| Q |
223 |
cctacacccgccgtctcttcctctctgtcaccgaccccgattccttcctctttaattccctcatcaaagcctcttcccagcacggtttctcccttgacac |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35446270 |
cctacacccgccgtctcttcctctctgtcaccgaccccgattccttcctctttaattccctcatcaaagcctcttcccagcacggtttctcccttgacac |
35446171 |
T |
|
| Q |
323 |
tatctttttctaccgtcgtatgctttcttcccctcacaaaccttcttcct |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35446170 |
tatctttttctaccgtcgtatgctttcttcccctcacaaaccttcttcct |
35446121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University