View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21400_high_1 (Length: 546)

Name: NF21400_high_1
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21400_high_1
NF21400_high_1
[»] chr1 (12 HSPs)
chr1 (42-535)||(48585695-48586193)
chr1 (308-535)||(48640268-48640495)
chr1 (337-531)||(48661906-48662100)
chr1 (344-535)||(48617776-48617967)
chr1 (340-459)||(48629282-48629401)
chr1 (344-535)||(11547599-11547790)
chr1 (337-459)||(48667567-48667689)
chr1 (337-534)||(48653489-48653686)
chr1 (319-473)||(48656998-48657152)
chr1 (74-129)||(48589927-48589986)
chr1 (74-129)||(48595011-48595070)
chr1 (74-129)||(48599622-48599681)
[»] chr8 (3 HSPs)
chr8 (306-473)||(25892445-25892613)
chr8 (335-533)||(27224340-27224538)
chr8 (335-530)||(27228546-27228741)
[»] chr3 (1 HSPs)
chr3 (337-535)||(19665125-19665323)


Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 42 - 535
Target Start/End: Complemental strand, 48586193 - 48585695
Alignment:
Q  42 gatgggagatgaagtgtggtaaaatgtagtccacaaatataattaatttcattatcgtttttgcattaaatatgacaaggaaaaaatacaatttgccaaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48586193 gatgggagatgaagtgtggtaaaatgtagtccacaaatataattaatttcattatcgtttttgcattaaatatgacaaggaaaaaatacaatttgccaaa 48586094  T
Q  142 acaaatgacaaagacaaaatattattattaatttattagaatgttgtcaaacctgtg-----acacaagggaagaggaagtctttcttccaatataagag 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  48586093 acaaatgacaaagacaaaatattattattaatttattagaatgttgtcaaacctgtgctgtgacacaagggaagaggaagtctttcttccaatataagag 48585994  T
Q  237 agcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaataaataataaaaagaaaaatgacatacgaagatcccattaagctt 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585993 agcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaataaataataaaaagaaaaatgacatacgaagatcccattaagctt 48585894  T
Q  337 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585893 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 48585794  T
Q  437 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48585793 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatg 48585695  T

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Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 308 - 535
Target Start/End: Complemental strand, 48640495 - 48640268
Alignment:
Q  308 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640495 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 48640396  T
Q  408 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640395 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt 48640296  T
Q  508 actttctctttcgagttctttgatgatg 535  Q
    |||||| |||||||||||||||| ||||    
T  48640295 actttcgctttcgagttctttgacgatg 48640268  T

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Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 531
Target Start/End: Complemental strand, 48662100 - 48661906
Alignment:
Q  337 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 436  Q
    |||||||| |||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |||| || |||||||||||||    
T  48662100 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacag 48662001  T
Q  437 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgat 531  Q
    |||  ||||||||| ||||| ||  || | || ||||||   |||||||||||||||| || ||||||||| || ||  ||||||||||||||||    
T  48662000 agaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcattttcgagttctttgat 48661906  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 344 - 535
Target Start/End: Original strand, 48617776 - 48617967
Alignment:
Q  344 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 443  Q
    |||||| ||||||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||||  |||| ||||||| |||||||||||  ||    
T  48617776 tctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagc 48617875  T
Q  444 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg 535  Q
    ||||||| ||||  || ||| |||||| |||||||| |||| |   ||| |||||||||||||| || |  |||| |||||||| |||||||    
T  48617876 tggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatgatg 48617967  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 459
Target Start/End: Complemental strand, 48629401 - 48629282
Alignment:
Q  340 cttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 439  Q
    ||||| |||||||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 48629302  T
Q  440 cggctggcaaaaacatgcga 459  Q
      || |||||| ||||||||    
T  48629301 aagcaggcaaagacatgcga 48629282  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 535
Target Start/End: Complemental strand, 11547790 - 11547599
Alignment:
Q  344 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 443  Q
    |||||||||||| ||||||||||||||||| |||| || || ||| ||||| ||||||||||||||||||  |||| ||||||| ||||||| |||  ||    
T  11547790 tctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagc 11547691  T
Q  444 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg 535  Q
    ||||||| |||| | | | | |||||||||| |||| |||| ||  ||  |||| ||| ||||| || || |||| ||||||||||||||||    
T  11547690 tggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatg 11547599  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 48667689 - 48667567
Alignment:
Q  337 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 436  Q
    |||||||| |||||||||||||||||||||||||||| |||| || ||||||| || | ||||||||||||||||||  |||| ||||||| ||||||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag 48667590  T
Q  437 agacggctggcaaaaacatgcga 459  Q
    | |  | ||||||||| ||||||    
T  48667589 aaaaaggtggcaaaaatatgcga 48667567  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 534
Target Start/End: Complemental strand, 48653686 - 48653489
Alignment:
Q  337 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 436  Q
    |||||| | |||| |||||||||||||||||| || | | |  || | |||| ||||| | ||||||||||||||||  |||| || |||| ||||||||    
T  48653686 ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatcacaacag 48653587  T
Q  437 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat 534  Q
    | |  ||||| ||| ||||  || ||| ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| |||||||||||||||    
T  48653586 aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgat 48653489  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 473
Target Start/End: Complemental strand, 48657152 - 48656998
Alignment:
Q  319 gaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactg 418  Q
    |||| ||||||| || |||||||||| |||| |||  || | ||||| ||||||  |||| ||  |||||| |||| |||||||||||||||| |  |||    
T  48657152 gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg 48657053  T
Q  419 ttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 473  Q
    | ||||||||||||||  |||  ||||||||| |||||  | |||||||||||||    
T  48657052 tcatcttcaccacaacgcagaaagctggcaaagacatggaaactgctaacaacat 48656998  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 48589986 - 48589927
Alignment:
Q  74 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 129  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48589986 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48589927  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 48595070 - 48595011
Alignment:
Q  74 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 129  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48595070 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48595011  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 48599681 - 48599622
Alignment:
Q  74 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 129  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48599681 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48599622  T

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Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 306 - 473
Target Start/End: Original strand, 25892445 - 25892613
Alignment:
Q  306 aaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggact-aggaaagtatcttgctgc 404  Q
    ||||||| || || |||||||||||||||| ||||||||||||||||||   ||| ||||| ||||||||||| |||| || |||||| | |||||||||    
T  25892445 aaaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgc 25892544  T
Q  405 aaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 473  Q
    || ||||||  || | ||||||||||||||||| || || |||| ||||||||||  ||||||||||||    
T  25892545 aaggggtgcatctatcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat 25892613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 533
Target Start/End: Complemental strand, 27224538 - 27224340
Alignment:
Q  335 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 434  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || |||||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27224538 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27224439  T
Q  435 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatga 533  Q
    |||||  ||||||||| |  || || ||| |||||| |||| ||| |||||||  | |||| ||||| ||||| || || | ||  |||||||||||||    
T  27224438 agagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatga 27224340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 530
Target Start/End: Complemental strand, 27228741 - 27228546
Alignment:
Q  335 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 434  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27228741 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27228642  T
Q  435 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttga 530  Q
     ||||  ||||||| | |  || || ||| ||||||||||||||| |||| ||  | |||| ||||| ||||| || || | ||||||||||||||    
T  27228641 tgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttga 27228546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 337 - 535
Target Start/End: Original strand, 19665125 - 19665323
Alignment:
Q  337 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 436  Q
    |||||| |||| | ||||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||||| |  | || ||||||| ||| ||||    
T  19665125 ctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacag 19665224  T
Q  437 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatg 535  Q
    |||  ||||||||| |||||| | ||| ||||||||||| | |||||| |   |||||||| ||||||||| || ||  |||| | |||||||||||||    
T  19665225 agaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatg 19665323  T

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