View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21400_high_3 (Length: 321)
Name: NF21400_high_3
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21400_high_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 6128057 - 6127737
Alignment:
| Q |
1 |
taacaagtgttgtaatagtgatttgtggggagatgcaattgttagtaagcaatataaatagtactatgttgcatgatttatgtgttaagcaagtgggtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6128057 |
taacaagtgttgtaatagtgatttgtggggagatgcaattgttcgtaagcaatataaatagtactatgttgcatgatttatgtgttaagcaagtgggtgg |
6127958 |
T |
|
| Q |
101 |
gagaacaacgattagggacaaaaatcgactagtcttcttaaccagtctttgtataaaattataaatataagtttggtctctaaaatattataggtttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6127957 |
gagaacaacgattagggacaaaaatcgactagtcttcttaaccagtctttgtataaaattataaatctaagtttggtctctaaaatattataggtttaag |
6127858 |
T |
|
| Q |
201 |
cccagcacgttatatttttgacaaaaaatatatgtttttactaaaagttgtgttttggtaccttgataaataattgatctttgagtttcaaatgaaccca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
6127857 |
cccagcacgttatatttttgacaaaaaatatatgtttttactaaaagttgtgttttggtaccttgataaataattgatctttgagtataaaatgaaccca |
6127758 |
T |
|
| Q |
301 |
taagaaagttggttcataatg |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6127757 |
taagaaagttggttcataatg |
6127737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University