View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21400_high_4 (Length: 302)
Name: NF21400_high_4
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21400_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 29196665 - 29196378
Alignment:
| Q |
1 |
aagttaagtatgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacataaca |
100 |
Q |
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| T |
29196665 |
aagttaagtatgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacataaca |
29196566 |
T |
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| Q |
101 |
tgtttggtcgtagtaatcattattatcctgatggtaatagttattattttgatttagaaaaggaagattctccacattttagagtagtaatcaaacctga |
200 |
Q |
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| T |
29196565 |
tgtttggttgtagtaatcgttattatcctgatggtaatagttattattttgatttagaaaaggaagattctccacattttagagtagtaatcaaacctga |
29196466 |
T |
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| Q |
201 |
atttgtggaaagagtgaataaattcatgttgaattatgaaggtgccaatattcattccctaaaagtgaattttccattaggtgatgat |
288 |
Q |
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| T |
29196465 |
atttgtggaaagagtgaataaattcatgttgaattatgaaggtgccaatattcattccctaaaagtgaattttccattaggtgatgat |
29196378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 38173651 - 38173546
Alignment:
| Q |
1 |
aagttaagtatgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacataaca |
100 |
Q |
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|||||| || |||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||| |||||| | ||||||| |
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| T |
38173651 |
aagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaacgatggcttcatgaatggagatcaagaattgacctcaattttgatctccataaca |
38173552 |
T |
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| Q |
101 |
tgtttg |
106 |
Q |
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|||||| |
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| T |
38173551 |
tgtttg |
38173546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 42796358 - 42796453
Alignment:
| Q |
11 |
tgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacataacatgtttg |
106 |
Q |
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||||||||||||||||||||||| |||||| ||| ||||||||| |||||| ||| || | |||||||||||||||| | |||| |||||||| |
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| T |
42796358 |
tgaaggatttggtgaaaacaagcgcattgtccaaacgatggattcacgaatggggattaaggacggacctcaactttgatcttcataccatgtttg |
42796453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38286699 - 38286603
Alignment:
| Q |
1 |
aagttaagtatgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacata |
97 |
Q |
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|||||| || |||||||||||||||||||||| ||||||| ||| |||| |||| |||||| ||| | | |||||||||||||||||| |||| |
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| T |
38286699 |
aagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatggggattcaggatggacctcaactttgatattcata |
38286603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 35073785 - 35073690
Alignment:
| Q |
11 |
tgaaggatttggtgaaaacaagcatattgtctaaaacatggattcatgaatggagatcaaccaaggacctcaactttgatatacataacatgtttg |
106 |
Q |
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||||||||||||||||||| || |||||||||| |||| |||| |||||| ||| || | |||||||||||||||| | |||| |||||||| |
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| T |
35073785 |
tgaaggatttggtgaaaactagtgcattgtctaaacgatgggttcacgaatggggattaaggacggacctcaactttgatcttcataccatgtttg |
35073690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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