View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21400_high_5 (Length: 298)
Name: NF21400_high_5
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21400_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37818609 - 37818854
Alignment:
| Q |
1 |
aactcaaaataaaagttttgccaattgtggaatgaagaaagagttattaccaaatagagagtgagagtcactgtacttgctctatcaatccttccattcg |
100 |
Q |
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| T |
37818609 |
aactcaaaataaaagttttgccaattgtggaatgaagaaagagttattaccaaatagagagtgagagtcactgtacttgctctatcaatccttccattcg |
37818708 |
T |
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| Q |
101 |
atgcatgtgaaaacgacattaattccatttagaaaaataaaaacaaagctatttgtattcatgtatgacacaatgtaaa----catgttaacaagttatt |
196 |
Q |
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| T |
37818709 |
atgcatgtgaaaacgacattaattccatttagaaaaataaaaacaaagctatttgtattcatgtatgacacaatgtaaacagccatgttaacaaaacaac |
37818808 |
T |
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| Q |
197 |
agt-actccattgcctttgaatgaaaggttataaacatatgtccct |
241 |
Q |
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| T |
37818809 |
attaactccattgcctttgaatgaaaggttataaacatatgtccct |
37818854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 37810745 - 37810826
Alignment:
| Q |
65 |
gagtcactgtacttgctctatcaatccttccattcgatgcatgtgaaaacgacattaattccattt--agaaaaataaaaac |
144 |
Q |
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| T |
37810745 |
gagtcagtgtactttctctatcagttcttccattcagtgcatgtgaaagtgacattaattgcatttggagaaaaacaaaaac |
37810826 |
T |
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