View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21400_low_3 (Length: 323)

Name: NF21400_low_3
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21400_low_3
NF21400_low_3
[»] chr2 (1 HSPs)
chr2 (19-314)||(38747650-38747948)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 38747650 - 38747948
Alignment:
Q  19 tggaacatcaagagattcaagataacccatgttttgtatctgaagtgctttagcagcagaaacagaaacaggtnnnnnnnnnnnnnnnnn---tgaaccg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||    
T  38747650 tggaacatcaagagattcaagataacccatgttttgtatctgaagtgctttagcagcagaaacagaaacaggtgaagaagaagaagcagaagatgaaccg 38747749  T
Q  116 tcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgtgaaagcg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  38747750 tcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgtgaaagcg 38747849  T
Q  216 atgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggagaattat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38747850 atgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggagaattat 38747948  T

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