View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21400_low_7 (Length: 263)

Name: NF21400_low_7
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21400_low_7
NF21400_low_7
[»] chr2 (15 HSPs)
chr2 (1-246)||(32310905-32311150)
chr2 (15-246)||(32813371-32813602)
chr2 (13-183)||(32792566-32792736)
chr2 (28-167)||(32563727-32563866)
chr2 (74-246)||(32799246-32799418)
chr2 (1-170)||(28213668-28213835)
chr2 (5-140)||(28222469-28222604)
chr2 (70-170)||(32785109-32785210)
chr2 (1-60)||(32790315-32790374)
chr2 (194-246)||(32306775-32306827)
chr2 (21-76)||(28148180-28148235)
chr2 (1-50)||(32799198-32799247)
chr2 (42-111)||(28179344-28179413)
chr2 (217-246)||(32563887-32563916)
chr2 (79-111)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32311150 - 32310905
Alignment:
Q  1 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttgg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311150 cagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttgg 32311051  T
Q  101 aatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccagtgccatca 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311050 aatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccagtgccatca 32310951  T
Q  201 aaatcaataaattctgtaacagctgtcactttacatggccaaaact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32310950 aaatcaataaattctgtaacagctgtcactttacatggccaaaact 32310905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 32813371 - 32813602
Alignment:
Q  15 aatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  115 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccagtgccatcaaaatcaataaattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  215 tgtaacagctgtcactttacatggccaaaact 246  Q
    |||||||  ||||| |||||||||||||||||    
T  32813571 tgtaacatttgtcattttacatggccaaaact 32813602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
Q  13 gcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagtttt 112  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32792566 gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt 32792665  T
Q  113 aataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttt 183  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32792666 aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt 32792736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 32563727 - 32563866
Alignment:
Q  28 agaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaataaaacataacag 127  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32563727 agaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacag 32563826  T
Q  128 aacactttgatttgtttatatttattgcagccttgcaaca 167  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32563827 aacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 32799246 - 32799418
Alignment:
Q  74 atacaaaaatatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaag 173  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag 32799345  T
Q  174 taaacatttttcaacccagtgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaact 246  Q
    ||||||| ||| ||  ||||||||  |||||  ||||||||| ||| ||||||||||||||||||||||||||    
T  32799346 taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaact 32799418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 28213668 - 28213835
Alignment:
Q  1 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttgg 100  Q
    |||||||||||||||||||||||||  ||||| |||     |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  28213668 cagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaataccttgg 28213765  T
Q  101 aatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacacta 170  Q
    ||||||||||||| |||  ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  28213766 aatccaagttttattaaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 28222604 - 28222469
Alignment:
Q  5 tgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatc 104  Q
    ||||||||| | |||||||||||||||| |||  || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28222604 tgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatc 28222505  T
Q  105 caagttttaataaaacataacagaacactttgattt 140  Q
    ||||||||| |||  |||||||||||||||||||||    
T  28222504 caagttttattaaggcataacagaacactttgattt 28222469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 32785109 - 32785210
Alignment:
Q  70 gcttatacaaaa-atatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacac 168  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac 32785208  T
Q  169 ta 170  Q
    ||    
T  32785209 ta 32785210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32790315 - 32790374
Alignment:
Q  1 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32790315 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 32306827 - 32306775
Alignment:
Q  194 gccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaact 246  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32306827 gccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaact 32306775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 28148235 - 28148180
Alignment:
Q  21 atatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttata 76  Q
    |||| ||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  28148235 atatataagaatcatttactgatctgtaattgtaagagttgaatagggagcttata 28148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
Q  1 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaat 50  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat 32799247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 28179413 - 28179344
Alignment:
Q  42 atctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttt 111  Q
    |||| |||||||||||||||||||||||||| |||  |||||| ||||  |||||||  |||||||||||    
T  28179413 atctgtaattgtaagagttgaatagggagctgataagaaaatacactttgataccttcaaatccaagttt 28179344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 32563887 - 32563916
Alignment:
Q  217 taacagctgtcactttacatggccaaaact 246  Q
    ||||||||||||||||||||||||||||||    
T  32563887 taacagctgtcactttacatggccaaaact 32563916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 28211804 - 28211836
Alignment:
Q  79 aaaatatacttcaataccttggaatccaagttt 111  Q
    |||||| ||||||||||||||||||||||||||    
T  28211804 aaaatacacttcaataccttggaatccaagttt 28211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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