View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21400_low_8 (Length: 232)
Name: NF21400_low_8
Description: NF21400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21400_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5051570 - 5051458
Alignment:
| Q |
1 |
tctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5051570 |
tctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaat |
5051471 |
T |
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| Q |
100 |
tgttggattttca |
112 |
Q |
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| T |
5051470 |
tgttggattttca |
5051458 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 51273797 - 51273957
Alignment:
| Q |
1 |
tctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagataaat-catc-cttatattcgagaa |
98 |
Q |
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|||||||||| ||| |||||||| | | ||||||| ||| |||||||||| | |||||| ||||||||||||| ||| ||| |||||||||||||| |
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| T |
51273797 |
tctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaa |
51273896 |
T |
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| Q |
99 |
ttgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagactctacca |
159 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| || ||||||| ||||||| |
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| T |
51273897 |
ttgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctacca |
51273957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 51273963 - 51273919
Alignment:
| Q |
139 |
catacatggtagactctaccacgtgtggttttcttgcagagaaac |
183 |
Q |
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| T |
51273963 |
catacatggtagactctaccacgtgtggttttcttgcagagaaac |
51273919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 14907826 - 14907986
Alignment:
| Q |
1 |
tctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagataa-atcatc-cttatattcgagaa |
98 |
Q |
| |
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|||||||||| ||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| || | || |||||||||||||| |
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| T |
14907826 |
tctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaaaataaaatgtcttatattcgagaa |
14907925 |
T |
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| Q |
99 |
ttgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagactctacca |
159 |
Q |
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||||||||| ||| ||||||||| |||| ||||||||||||| || | ||||| ||||||| |
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| T |
14907926 |
ttgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctacca |
14907986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 14907989 - 14907948
Alignment:
| Q |
142 |
acatggtagactctaccacgtgtggttttcttgcagagaaac |
183 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||| |
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| T |
14907989 |
acatggtagactctactacgtgtggttttcttgcacagaaac |
14907948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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