View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21401_high_3 (Length: 330)
Name: NF21401_high_3
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21401_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 314
Target Start/End: Complemental strand, 4559865 - 4559553
Alignment:
| Q |
2 |
agcaagcaaggatccattcgagggattgacggaggaaacaaggctcacaacgtatctaatggctcacaaagaggatatgagaggaactcgagcacaatgc |
101 |
Q |
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| T |
4559865 |
agcaagcaaggatccattcgagggattgacgaaggaaacaaggctcgcaacgtgtctaatggctcgcaaagaggatatgagaggaactcgagcgcaatgc |
4559766 |
T |
|
| Q |
102 |
ttgataaaattgaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactagaagctcgcccggactcgacgcaaactggtcg |
201 |
Q |
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| T |
4559765 |
ttgataaaattcaagaaccagaaacatcgaaaagatcgtccagtgttgtggttaagttgatgggactagaagctctcccggactcgacgcaaactggtcg |
4559666 |
T |
|
| Q |
202 |
gacttctgtctgctccaccgataaaaacgagatcatagaaagaactatcacaagtgacgaatacaagaaacaccaaagttcggtgtccccaaggaataga |
301 |
Q |
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| T |
4559665 |
gacttctgtctgttccaccgataaaaacgagatcatagaaagaactatcacaggtgacgaatacaagaaacaccaaagttcggtgtccccaaggaataga |
4559566 |
T |
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| Q |
302 |
aggggcaataatt |
314 |
Q |
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| T |
4559565 |
aggggcaataatt |
4559553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 5025269 - 5025208
Alignment:
| Q |
113 |
gaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactagaagc |
174 |
Q |
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| T |
5025269 |
gaagaaccagaaagtgctaaaagaccatcaagtgttgtggcaaagttgatgggactagaagc |
5025208 |
T |
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