View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21401_high_5 (Length: 290)
Name: NF21401_high_5
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21401_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 53090149 - 53090407
Alignment:
| Q |
14 |
tgagaaatgttatcaacacacattctaacatacattttccaacaatgtgtgttgctagcatttctcttgtcacgctatattgaaaacacaaatgaattta |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
53090149 |
tgagaaatgttatcaacacacgttctaacatatacttttcaataatgtgtgttgctagcatttctcttgtcacactatattgaaagcacaaatgaattta |
53090248 |
T |
|
| Q |
114 |
cttatatattgtgcacagacaaaagtaaaaattaaaagcagaannnnnnnnncccttcacttcctttattcaattagacggtgaagaaagcaaaagacac |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090249 |
cttatatatagtgcacagacaaaagtaaaaattaaaagcagaattttttttt--cttcacttcctttattcaattagacggtgaagaaagcaaaagacac |
53090346 |
T |
|
| Q |
214 |
aaatacaagcaagcacatgacacactctgcaaaattgatgacaatctgcacttgtagtttgt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53090347 |
aaatacaagcaagcacatgacacactctgc-aaattgatgacaatctgcacttgtagtttgt |
53090407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University