View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21401_low_1 (Length: 1055)
Name: NF21401_low_1
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21401_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 678; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 286 - 1045
Target Start/End: Complemental strand, 44344316 - 44343543
Alignment:
| Q |
286 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccacttgtaagtaacaatgcattgtcttactt |
385 |
Q |
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| T |
44344316 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccagttgtaagtaacaatgcattgtcttactt |
44344217 |
T |
|
| Q |
386 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcattatatatattcttaaatttagctat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44344216 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcattatat----tcttaaatttagctat |
44344121 |
T |
|
| Q |
486 |
cataataaaatgtggtacactaactcaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagca-------- |
577 |
Q |
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| T |
44344120 |
cataataaaatgtggtacactaactaaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagcaacagctcc |
44344021 |
T |
|
| Q |
578 |
----------ccacaaactccaggcataaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagcttcaa |
667 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44344020 |
tccaacagcaccacaaactccaggcacaaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagcttcaa |
44343921 |
T |
|
| Q |
668 |
cttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatctagtttttccagctcttgcctctgcatacatcttagcacttgcac |
767 |
Q |
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| T |
44343920 |
cttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatctagtttttccagctcttgcctctgcatacatcttagcacttgcac |
44343821 |
T |
|
| Q |
768 |
gttacgcatttccatcatctccttctactacatcaaattcacaacaacaagagattttcaaaggaagtagcatgttcagaatgtatgttattgttggaac |
867 |
Q |
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| T |
44343820 |
gttacgcatttccatcatctccttctactacatcaaattcacaacaacaagagattttccaagtaagtagcatgttcagaatgtatattattgttggaac |
44343721 |
T |
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| Q |
868 |
aactattggcttgtttttgccactagcttatgttcttggagggtttgcaagaggtgatcaacatgctgtgcgttctgcaacaccgcatcttttcttgctt |
967 |
Q |
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| T |
44343720 |
aactattggcttgtttttgccactagcttatgttcttggagggtttgcaagaggtgatcaacatgctgtgcgttctgcaacaccgcatcttttcttgctt |
44343621 |
T |
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| Q |
968 |
tcttttcagatattgactgagaatattattagcagtttgtctctattttcaccacctgttagagctttggttcctatg |
1045 |
Q |
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| T |
44343620 |
tcttttcagatattgactgagaatattattagcagtttgtctctattttcaccacctgttagagctttggttcctatg |
44343543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 7e-89
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 44344585 - 44344383
Alignment:
| Q |
15 |
cataggtcattgacgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttcttcaccaaattttggatcatcaca |
114 |
Q |
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| T |
44344585 |
cataggtcattgacgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttgttcaccaaattttggatcatcaca |
44344486 |
T |
|
| Q |
115 |
aactcctactccaacgcctttcnnnnnnnngaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtataaaaactaacataca |
214 |
Q |
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| T |
44344485 |
aactcctactccaacgcctttcttttttttgaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtaaaaaaactaacctaca |
44344386 |
T |
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| Q |
215 |
tct |
217 |
Q |
| |
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||| |
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| T |
44344385 |
tct |
44344383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 634 - 724
Target Start/End: Complemental strand, 39475241 - 39475151
Alignment:
| Q |
634 |
aatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatcta |
724 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39475241 |
aatgatgggttcattacgtgtaatagaactacaacttgtagcctttgtattggttttctcagcaagtggtcttgtccctcttcttgatcta |
39475151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 900
Target Start/End: Complemental strand, 39475036 - 39474987
Alignment:
| Q |
851 |
tatgttattgttggaacaactattggcttgtttttgccactagcttatgt |
900 |
Q |
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||||||||||||||||||| | |||| ||||| ||||| ||||||||||| |
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| T |
39475036 |
tatgttattgttggaacaattcttggattgttcttgcctctagcttatgt |
39474987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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