View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21401_low_2 (Length: 682)
Name: NF21401_low_2
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21401_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 286 - 663
Target Start/End: Complemental strand, 44344316 - 44343925
Alignment:
| Q |
286 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccacttgtaagtaacaatgcattgtcttactt |
385 |
Q |
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| T |
44344316 |
aatcccagcaataataataatctgaattttccttctcaatttctcattttcatcaccttttggttcttccagttgtaagtaacaatgcattgtcttactt |
44344217 |
T |
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| Q |
386 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcattatatatattcttaaatttagctat |
485 |
Q |
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| T |
44344216 |
atcaaataatttctatcttgaattttgaattgatgattgtcattgtctctcaaatgcacgcatgcatgcatgcatt----atattcttaaatttagctat |
44344121 |
T |
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| Q |
486 |
cataataaaatgtggtacactaactcaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgt------------ |
573 |
Q |
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| T |
44344120 |
cataataaaatgtggtacactaactaaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagcaacagctcc |
44344021 |
T |
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| Q |
574 |
------agcaccacaaactccaggcataaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagct |
663 |
Q |
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| T |
44344020 |
tccaacagcaccacaaactccaggcacaaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagct |
44343925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 44344585 - 44344383
Alignment:
| Q |
15 |
cataggtcattgacgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttcttcaccaaattttggatcatcaca |
114 |
Q |
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| T |
44344585 |
cataggtcattgacgacatggaagagaaacaagtgttgtgcatgctacattacacgttccaatggtttatcttttgttcaccaaattttggatcatcaca |
44344486 |
T |
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| Q |
115 |
aactcctactccaacgcctttcnnnnnnnngaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtataaaaactaacataca |
214 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
44344485 |
aactcctactccaacgcctttcttttttttgaaccaacaattcttcctcttctcttctcatcatttcattttcacttgtaagtaaaaaaactaacctaca |
44344386 |
T |
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| Q |
215 |
tct |
217 |
Q |
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||| |
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| T |
44344385 |
tct |
44344383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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