View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21401_low_3 (Length: 585)

Name: NF21401_low_3
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21401_low_3
NF21401_low_3
[»] chr3 (3 HSPs)
chr3 (18-456)||(45082399-45082834)
chr3 (482-565)||(45082836-45082919)
chr3 (370-442)||(30440644-30440715)
[»] chr7 (12 HSPs)
chr7 (370-443)||(18343912-18343985)
chr7 (370-443)||(18347441-18347514)
chr7 (370-450)||(19531546-19531626)
chr7 (370-440)||(18344818-18344888)
chr7 (370-443)||(18581948-18582021)
chr7 (369-444)||(42681338-42681412)
chr7 (370-443)||(31299701-31299773)
chr7 (370-443)||(42681195-42681267)
chr7 (385-435)||(9901996-9902046)
chr7 (385-435)||(21515998-21516048)
chr7 (385-435)||(28029733-28029783)
chr7 (385-435)||(36430608-36430658)
[»] chr5 (9 HSPs)
chr5 (368-443)||(10050873-10050948)
chr5 (370-443)||(6685889-6685962)
chr5 (374-439)||(9246609-9246674)
chr5 (370-443)||(4195747-4195819)
chr5 (370-443)||(34180901-34180973)
chr5 (385-435)||(3432382-3432432)
chr5 (385-435)||(4630401-4630451)
chr5 (385-435)||(16167781-16167831)
chr5 (385-435)||(35885773-35885823)
[»] chr4 (10 HSPs)
chr4 (368-439)||(748590-748661)
chr4 (370-443)||(1452387-1452460)
chr4 (368-443)||(53051467-53051541)
chr4 (370-442)||(14066299-14066370)
chr4 (384-435)||(32270455-32270506)
chr4 (385-435)||(7328098-7328148)
chr4 (385-435)||(7984535-7984585)
chr4 (385-435)||(29275996-29276046)
chr4 (385-435)||(40818933-40818983)
chr4 (385-435)||(42243869-42243919)
[»] chr1 (4 HSPs)
chr1 (368-443)||(395448-395523)
chr1 (368-443)||(28375690-28375764)
chr1 (378-442)||(29529081-29529144)
chr1 (385-435)||(31972658-31972708)
[»] chr8 (5 HSPs)
chr8 (368-443)||(41264117-41264191)
chr8 (385-435)||(4362772-4362822)
chr8 (385-435)||(12132478-12132528)
chr8 (385-435)||(14694837-14694887)
chr8 (385-435)||(33332331-33332381)
[»] chr2 (3 HSPs)
chr2 (377-442)||(17955705-17955769)
chr2 (385-435)||(5246077-5246127)
chr2 (385-435)||(43903894-43903944)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 45082399 - 45082834
Alignment:
Q  18 atgaaatatcgcaattacaacttcaaaaataacatgaaccaaaaa-gaagcaaatacctatctcttttttctttagttttctgtcaccttagaataatca 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45082399 atgaaatatcgcaattacaacttcaaaaataacatgaacaaaaaaagaagcaaatacctatctcttttttctttagttttttgtcaccttagaataatca 45082498  T
Q  117 gcaaaagaggaacaacgtgacaacaacaaacaaacacaagaagaatattaagcattgttttattttctgttaatgaatttcgcacatctcaacgactctc 216  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45082499 gcaaaagaggaacaacgtgacaacaaca----aacacaagaagaatattaagcattgttttattctctgttaatgaatttcgcacatctcaacgactctc 45082594  T
Q  217 ccatgtttcgtcaacaggttcttttctttcctctgtataatcaaatcttttttcacgtttcatttaaacattctgcgttttctcccatgttcatttaatc 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45082595 ccatgtttcgtcaacaggttcttttctttcctctgtatgatcaaatcttttttcatgtttcatttaaacattctgcgttttctcccatgttcatttaatc 45082694  T
Q  317 ttggcgttctgttaccgttacgtaacnnnnnnnnnnnnnnnnntattctataacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatg 416  Q
    |||||||||||||||| |||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45082695 ttggcgttctgttaccattacgtaacaaaaaaatcagaaaaaatattctataacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatg 45082794  T
Q  417 cgctctaccagctgagctaagacggctgattgtttaattg 456  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  45082795 cgctctaccagctgagctaagacggctggttgtttaattg 45082834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 482 - 565
Target Start/End: Original strand, 45082836 - 45082919
Alignment:
Q  482 tgggtcatgtaataattatgcatgtgttctgtgtaccaacaaaaaattgattgctcaattatgtatcatgaataacgtcaacgc 565  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45082836 tgggtcatgtaataattatgcgtgtgttttgtgtacgaacaaaaaattgattgctcaattatgtatcatgaataacgtcaacgc 45082919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 30440715 - 30440644
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 442  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  30440715 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggc 30440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 18343985 - 18343912
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343985 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 18343912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 18347514 - 18347441
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347514 cgccatctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 18347441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 19531626 - 19531546
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggctgattgtt 450  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  19531626 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctgcttgtt 19531546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 18344888 - 18344818
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacg 440  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344888 cgccgtctgtggcaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacg 18344818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 18581948 - 18582021
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  18581948 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 18582021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 444
Target Start/End: Original strand, 42681338 - 42681412
Alignment:
Q  369 acgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggctg 444  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  42681338 acgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctg 42681412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 31299773 - 31299701
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||    
T  31299773 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 31299701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 42681195 - 42681267
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||    
T  42681195 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 42681267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 9902046 - 9901996
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  9902046 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 9901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 21516048 - 21515998
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  21516048 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 21515998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 28029733 - 28029783
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  28029733 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 28029783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 36430608 - 36430658
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  36430608 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 36430658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 10050873 - 10050948
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  10050873 aacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 10050948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 6685889 - 6685962
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6685889 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 6685962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 9246674 - 9246609
Alignment:
Q  374 gtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 439  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  9246674 gtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 9246609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 4195747 - 4195819
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  4195747 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 4195819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 34180973 - 34180901
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||    
T  34180973 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 34180901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 3432432 - 3432382
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  3432432 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 3432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 4630451 - 4630401
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  4630451 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 4630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 16167831 - 16167781
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  16167831 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 16167781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 35885773 - 35885823
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  35885773 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 35885823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 748661 - 748590
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 439  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  748661 aacgccgtctgtgggaatcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 748590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 1452387 - 1452460
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  1452387 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 1452460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 53051467 - 53051541
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  53051467 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 53051541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 14066299 - 14066370
Alignment:
Q  370 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 442  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  14066299 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 14066370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 32270506 - 32270455
Alignment:
Q  384 atcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    |||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  32270506 atcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 32270455  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 7328098 - 7328148
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  7328098 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 7328148  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 7984585 - 7984535
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  7984585 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 7984535  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 29275996 - 29276046
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  29275996 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 29276046  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 40818933 - 40818983
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  40818933 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 40818983  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 42243919 - 42243869
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  42243919 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 42243869  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 395448 - 395523
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  395448 aacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggct 395523  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 28375690 - 28375764
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||    
T  28375690 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 28375764  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 29529081 - 29529144
Alignment:
Q  378 gtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 442  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  29529081 gtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 29529144  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 31972658 - 31972708
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  31972658 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 31972708  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 41264191 - 41264117
Alignment:
Q  368 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 443  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||    
T  41264191 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 41264117  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 4362772 - 4362822
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  4362772 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 4362822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 12132528 - 12132478
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  12132528 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 12132478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 14694887 - 14694837
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  14694887 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 14694837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 33332331 - 33332381
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  33332331 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 33332381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 17955769 - 17955705
Alignment:
Q  377 tgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggc 442  Q
    |||||| ||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  17955769 tgtggggatcaaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 17955705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 5246127 - 5246077
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  5246127 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 5246077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 43903894 - 43903944
Alignment:
Q  385 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 435  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  43903894 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 43903944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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