View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21401_low_4 (Length: 538)
Name: NF21401_low_4
Description: NF21401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21401_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 78 - 530
Target Start/End: Complemental strand, 30635328 - 30634876
Alignment:
| Q |
78 |
tctccccatgttcttgttcctcctataacaattatccttttcattttcatgatgttcctacaaatccaaacaagtactacttcttctctctcatctccca |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30635328 |
tctccccatgttcttgttcctcctataacaattatccttttcattttcatgatgttcctacaaatccaaacaagtactacttcttctctctcatctccca |
30635229 |
T |
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| Q |
178 |
aacaaaaacctttcatattacctttaaaagttcaaacactaccacatggcacaatttcacttccaaaaccttcttcaaaactctcttttcaacacaatgt |
277 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30635228 |
aacaaaaacctttcatattgcctttaaaagttcaaacactaccacatggcacaatttcacttccaaaaccttcttcaaaactctcttttcaacacaatgt |
30635129 |
T |
|
| Q |
278 |
aaccttaacagtttcactaacactaggctcacccccacagaatgttaccatggtcctcgacacagggagtgaactctcatggcttcattgcaaaaaactt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30635128 |
aaccttaacagtttcactaacactaggctcacccccacagaatgttaccatggtcctcgacacagggagtgaactctcatggcttcattgcaaaaaactt |
30635029 |
T |
|
| Q |
378 |
ccaaatttaaactccattttcaaccctctactttcttcttcttacacccccaccccatgcacctcacccatttgcattacccgaacccgagacttccccg |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30635028 |
ccaaatttaaactccattttcaaccctctactttcttcttcttacacccccaccccatgcacctcacccatttgcattacccgaacccaagacttccccg |
30634929 |
T |
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| Q |
478 |
tacctgttcaatgcgacccgaagaaactctgccacgctacaatcacctatgct |
530 |
Q |
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| T |
30634928 |
tacctgttcaatgcgacccgaagaaactctgccacgctacaatcacctatgct |
30634876 |
T |
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Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 262 - 442
Target Start/End: Complemental strand, 34380965 - 34380785
Alignment:
| Q |
262 |
cttttcaacacaatgtaaccttaacagtttcactaacactaggctcacccccacagaatgttaccatggtcctcgacacagggagtgaactctcatggct |
361 |
Q |
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|||| |||||||||||||| ||||| |||||| | || | || || || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34380965 |
ctttccaacacaatgtaacgttaacggtttcattgactgttggatctcctccacagagagttaccatggtcctcgacacagggagtgaactctcatggct |
34380866 |
T |
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| Q |
362 |
tcattgcaaaaaacttccaaatttaaactccattttcaaccctctactttcttcttcttacacccccaccccatgcacctc |
442 |
Q |
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||||||||||||||| || || |||||| |||||||||||| || |||||||||| ||||||||||| ||||||||||| |
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| T |
34380865 |
tcattgcaaaaaactccctaacctaaacttcattttcaacccacttgtttcttcttcatacacccccactccatgcacctc |
34380785 |
T |
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