View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21402_high_1 (Length: 640)
Name: NF21402_high_1
Description: NF21402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21402_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 47 - 625
Target Start/End: Complemental strand, 3447624 - 3447038
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtct---ttaaagactccctatatcatttattgattaaactaaaatgtaaatttttacttaa---tgatcagaa |
140 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3447624 |
gatttattcaataaataatgtatgtagcctatattaaagactacgtatatcatttattgattgaactaaaatgtaaatttttgcttataattgatcagaa |
3447525 |
T |
|
| Q |
141 |
agtgtaccactcaattgcaccatgtgcgaagaagtataacaacaaaaacagaaaatgctatctgattaataatacacccaccacatgacaaaacaaccgt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
3447524 |
agtgtaccactcaattgcaccatgtgcgaagaagtataacaacaaaagcagaaaatgctatctgatcaataatacccccactacatgacaaaacaaccgt |
3447425 |
T |
|
| Q |
241 |
aaaca--gttgtaaattattgttgctcaaagttttcctctcagaagaaaacaaccctaaacaagaaagatcttcaacatttagtgcttctcaatgaattc |
338 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3447424 |
aaacaaagttgtaaattattgttgctcaaagtttttctctcagaagaaaacaaccctaaacaagaaagatcttcaacatttagtgcttctcaatgaattc |
3447325 |
T |
|
| Q |
339 |
tttgaccctaccaatgagtgcattcatttgggcaccgacagtggggtctaaatccacagcaatcttgttgagatagaaactatgagtcattcccttgctc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3447324 |
tttgaccctaccaatgagtgcattcatttgggcaccgacagtggggtctaaatccacagcaatcttgttgagatagaaactatgagtcattcccttgctc |
3447225 |
T |
|
| Q |
439 |
acaaacaggtccacttctttattggccttcttcattgcttcatagtactccatttctgtgtccttcagcaaatcattttctgctaggcacaaaagaaatg |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3447224 |
acaaacaggtccacttctttattggccttcttcattgcttcatagtactccatttctgtgtccttcagcaaatcattttctgctaggcacaaaagaaatg |
3447125 |
T |
|
| Q |
539 |
gcggcagtttcaatccatcaagtggtggtgcccccgagcccatcgggcatgtgaaggggtggtccttgttgctcccaattggtagtg |
625 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3447124 |
gcggcagtttcaatccatcgagtggtggtgcccccgagcccatcgggcatgtgaaggggtgatccttgttgctcccaattggtagtg |
3447038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 286 - 434
Target Start/End: Complemental strand, 3450327 - 3450181
Alignment:
| Q |
286 |
aaacaaccctaaacaagaaagatcttcaacatttagtgcttctcaatgaattctttgaccctaccaatgagtgcattcatttgggcaccgacagtggggt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| || | | ||| ||||| |
|
|
| T |
3450327 |
aaacaaccctaaacaagaaagatcttcaaaatttactgcttctcaatgaattccttggccctaccaatgagtgcattcattaggcccctaacaacggggt |
3450228 |
T |
|
| Q |
386 |
ctaaatccacagcaatcttgttgagatagaaactatgagtcattccctt |
434 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3450227 |
ctaaatacacagcaatcttgttgagatagaaac--tgagtcattccctt |
3450181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 4980376 - 4980344
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtcttta |
79 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
4980376 |
gattcattcaataaatgatgtatgtagtcttta |
4980344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 8269961 - 8269931
Alignment:
| Q |
49 |
ttcattcaataaataatgtatgtagtcttta |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8269961 |
ttcattcaataaataatgtatgtagtcttta |
8269931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 31319619 - 31319533
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtctttaa---agactccctatatcatttattgattaaactaaaatgtaaatttttactta |
130 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| |||| | ||||||||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
31319619 |
gattcattcaaaaaatgatgtatgtagtctataataaagaccacatatatcattaattgaatgaacctaaatgtaaatttttactta |
31319533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 12295779 - 12295750
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtct |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12295779 |
gattcattcaataaataatgtatgtagtct |
12295750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 18731373 - 18731344
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtct |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18731373 |
gattcattcaataaataatgtatgtagtct |
18731344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 39940589 - 39940560
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtct |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39940589 |
gattcattcaataaataatgtatgtagtct |
39940560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 38468723 - 38468755
Alignment:
| Q |
47 |
gattcattcaataaataatgtatgtagtcttta |
79 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
38468723 |
gattcattcaataaataatgtatgtggtcttta |
38468755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University