View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21402_high_3 (Length: 293)

Name: NF21402_high_3
Description: NF21402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21402_high_3
NF21402_high_3
[»] chr8 (1 HSPs)
chr8 (1-293)||(25011426-25011720)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 25011426 - 25011720
Alignment:
Q  1 ttgtcttgctacaaaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaa-cacgttgctttgtcaaattatcgtttcgtgtaagt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||    
T  25011426 ttgtcttgctacaaaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagt 25011525  T
Q  100 gctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011526 gctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctt 25011625  T
Q  200 tggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgatgatg-tccatctca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  25011626 tggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgattatgatccatctca 25011720  T

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