View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21402_high_4 (Length: 285)
Name: NF21402_high_4
Description: NF21402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21402_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 28790594 - 28790877
Alignment:
| Q |
1 |
cagccaaccacagccttaccaaaaagactggagttcacaaaccggagtgatgaagaggctacagtactggtagcagccaaataagatgctgcttgtccac |
100 |
Q |
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| T |
28790594 |
cagccaaccaaagccttaccaaaaagactggagttcacaaaccggaatgatgaagaggctacagtactggtagcagccaaataagatgctgcttgtccac |
28790693 |
T |
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| Q |
101 |
tgcagccttttgtggttgcaaaaagacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaag |
200 |
Q |
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| T |
28790694 |
tgcagccttttgtggttgcaaaaagacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaag |
28790793 |
T |
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| Q |
201 |
aagatataaagcgcgaggaaggacctcttcagttggatccgaagaagctagggtgcatgtacctcctctagcttgggctaaaaa |
284 |
Q |
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| T |
28790794 |
aagatataaagcgcgaggaaggacctcttcagttggatccgaagaagctagggtgcatgtacctcctctagcttgggctaaaaa |
28790877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 28783614 - 28783763
Alignment:
| Q |
127 |
cctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaagaagatataaagcgcgaggaaggacct |
226 |
Q |
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| T |
28783614 |
cctgttttgcaataaattgcaaaatcttcacaattattcttatagaaatggtagtcaccaaatccattttcaagaagatacaaagcacggaataggacct |
28783713 |
T |
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| Q |
227 |
cttcagttggatccgaagaagctagggtgcatgtacctcctctagcttgg |
276 |
Q |
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| T |
28783714 |
ctttggttggatctgaagaagcacgcgtgcaagtacctcctcgagcttgg |
28783763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 32482567 - 32482452
Alignment:
| Q |
124 |
agacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaagaagatataaagcgcgaggaagga |
223 |
Q |
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||||| |||||||| |||| |||||| |||||||||||||| ||| | | || ||| | |||||||| ||||||| |||| || ||||||| |||||| |
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| T |
32482567 |
agaccagttttgcagtaaattgcaaagtcttcacagttattattgaaaacattgtaaccgccaaatccattttcaaaaagaaatgaagcgcggcgaagga |
32482468 |
T |
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| Q |
224 |
cctcttcagttggatc |
239 |
Q |
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| T |
32482467 |
catcttcagttggatc |
32482452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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