View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21402_low_1 (Length: 702)

Name: NF21402_low_1
Description: NF21402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21402_low_1
NF21402_low_1
[»] chr3 (8 HSPs)
chr3 (48-689)||(16191278-16191932)
chr3 (471-537)||(8821216-8821282)
chr3 (493-539)||(14486957-14487003)
chr3 (493-539)||(14513608-14513654)
chr3 (493-539)||(14513680-14513726)
chr3 (493-539)||(17471540-17471586)
chr3 (481-537)||(8821152-8821208)
chr3 (493-537)||(14487031-14487075)
[»] chr4 (4 HSPs)
chr4 (473-525)||(20634443-20634495)
chr4 (493-539)||(25242834-25242880)
chr4 (476-536)||(44079204-44079264)
chr4 (493-539)||(24826160-24826206)
[»] chr1 (3 HSPs)
chr1 (491-539)||(41087995-41088043)
chr1 (493-612)||(7643994-7644112)
chr1 (491-535)||(41092740-41092784)
[»] chr2 (7 HSPs)
chr2 (481-544)||(28388649-28388712)
chr2 (493-539)||(4109544-4109590)
chr2 (493-538)||(45110106-45110151)
chr2 (493-539)||(4109472-4109518)
chr2 (493-535)||(5168813-5168855)
chr2 (493-539)||(45108344-45108390)
chr2 (493-537)||(45108417-45108461)
[»] scaffold0227 (3 HSPs)
scaffold0227 (493-539)||(20112-20158)
scaffold0227 (493-550)||(20040-20097)
scaffold0227 (493-539)||(20184-20230)
[»] chr7 (4 HSPs)
chr7 (493-539)||(12612428-12612474)
chr7 (493-539)||(17834626-17834672)
chr7 (493-539)||(12599804-12599850)
chr7 (493-539)||(12599948-12599994)
[»] chr5 (1 HSPs)
chr5 (470-535)||(5539162-5539227)


Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 48 - 689
Target Start/End: Complemental strand, 16191932 - 16191278
Alignment:
Q  48 aaattctccaagattgtacttaatctt-gggaacaaatgttaactcgacagtactca--acttttctttttgatttcagagtaattacgagtgaaaagaa 144  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  16191932 aaattctcccagattgtacttaatctttgggaacaaatgttaactcgactgtactcacaacttttctttttgatttgagagtaattacgagtgaaaagaa 16191833  T
Q  145 atgtacttacaacttttcctttattgagcaactcgaaaaatatattgaagattgactttggtgaattgaatggttgtcaaagtcttcaaatcatttttct 244  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16191832 atgtacttacaacttttcctttatggagcaactcaaaaaagatattgaagattgactttggtgaattgaatggttgtcaaagtcttcaaatcatttttct 16191733  T
Q  245 atatttataatactcttaaaacaaaacataaaactagatattctccctctctcttttaaaaactttctgtcaaacaaggagagggatttttgtat-cctt 343  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16191732 atatttataatacgcttaaaacaaaacataaaattagatattctccctctctcttttaaaaactttctgtcaaacaaggagagggatttttgtatccctt 16191633  T
Q  344 ttcccttttgtctcctccctccatagtcattctactcaatgtccctccattcctctactaactcctaaac-aagccttagattttacttaaatcatttgt 442  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16191632 ttcccttttgtctcctccctccatagtcattctactccatgtccctccattcctctactaactcctaaacaaagccttagattttacttaaatcatttgt 16191533  T
Q  443 agtcatgataccacactactatctctcgactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacg--------tttggtgg 534  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  16191532 agtcatgatacaacactactatctctggactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtcttgacatttggtgg 16191433  T
Q  535 actgtaaactagtacaagttaacctcatcaaggacaaaagcctacatcttaacaagcttgaagcttggtggactatgggctcgtatgaaggaccatacca 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  16191432 actgtaaactagtacaagttaacctcatcaaggacaaaagcctacatcttaacaagcttgaagctctgtggactatgggctcgtatgaaggaccatacca 16191333  T
Q  635 cataaactatataacactttgacaactcaactcgtgcatatctcaacttgatgat 689  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16191332 cataaactatataacactttgacaactcaactcgtgcctatctcaacttgatgat 16191278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 537
Target Start/End: Complemental strand, 8821282 - 8821216
Alignment:
Q  471 actggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggact 537  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  8821282 actggttcaagtcgactctatgaagaacaaacgtctacgccttaaccggtttgacgtttggtggact 8821216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 14487003 - 14486957
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  14487003 aagaacaaacgtctacgccttaacagacttcacgcttggtggactgt 14486957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 14513654 - 14513608
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  14513654 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 14513608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 14513726 - 14513680
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    |||||||||| | ||||||||||||| ||||||| ||||||||||||    
T  14513726 aagaacaaacttatacgccttaataggcttgacgcttggtggactgt 14513680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 17471540 - 17471586
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    |||||||||||||||| |||||| | |||||||| ||||||||||||    
T  17471540 aagaacaaacgtctacaccttaacatacttgacgcttggtggactgt 17471586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 8821208 - 8821152
Alignment:
Q  481 gtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggact 537  Q
    ||||| |||||||| |||||||||  |||||||||||| ||||||  ||||||||||    
T  8821208 gtcgaccctatgaataacaaacgttgacgccttaataggcttgacacttggtggact 8821152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 537
Target Start/End: Complemental strand, 14487075 - 14487031
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggact 537  Q
    |||||||||||| |||||||||| || ||| ||||||||||||||    
T  14487075 aagaacaaacgtttacgccttaacaggcttcacgtttggtggact 14487031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 20634443 - 20634495
Alignment:
Q  473 tggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgac 525  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||    
T  20634443 tggtacatgtcaatcctatgaagaacaaaagtctacgccttaacagacttgac 20634495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 25242834 - 25242880
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  25242834 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 25242880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 44079264 - 44079204
Alignment:
Q  476 tacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggac 536  Q
    |||||||| | |||||||||||||||||| || ||||| | || |||||||||||||||||    
T  44079264 tacaagtcaaccctatgaagaacaaacgtatatgccttgacaggcttgacgtttggtggac 44079204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 24826160 - 24826206
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || || |||| ||||||||||||    
T  24826160 aagaacaaacgtctacgccttaacaggctagacgcttggtggactgt 24826206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 539
Target Start/End: Complemental strand, 41088043 - 41087995
Alignment:
Q  491 tgaagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  41088043 tgaagaacaaacgtctacgccttgacggacttgacgtttggtggactgt 41087995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 612
Target Start/End: Original strand, 7643994 - 7644112
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaactagtacaagttaacctcatcaaggacaaaagcctacatcttaacaagct 592  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||  ||| ||| | ||  |||  || ||| ||||| | ||||  ||||||| |||    
T  7643994 aagaacaaacgtctacgccttaacaaacttgacgtttgatggactgtggact-gtataggtcgaccgaataaagaacaaacgtctacgccttaacatgct 7644092  T
Q  593 tgaagcttggtggactatgg 612  Q
    ||| ||||||||||||||||    
T  7644093 tgacgcttggtggactatgg 7644112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 41092784 - 41092740
Alignment:
Q  491 tgaagaacaaacgtctacgccttaatagacttgacgtttggtgga 535  Q
    ||||||||||||||||||||||| |  ||||||| ||||||||||    
T  41092784 tgaagaacaaacgtctacgccttgacggacttgatgtttggtgga 41092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 28388649 - 28388712
Alignment:
Q  481 gtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaact 544  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||| |||||||||||| ||||    
T  28388649 gtcgatcctatgaagaacaaatttctacgtcttgacagacttgacgcttggtggactgtgaact 28388712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 4109590 - 4109544
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  4109590 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 4109544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 538
Target Start/End: Complemental strand, 45110151 - 45110106
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactg 538  Q
    ||||||||||||||||| ||||| || |||||||||||||||||||    
T  45110151 aagaacaaacgtctacgtcttaacaggcttgacgtttggtggactg 45110106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 4109518 - 4109472
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||    
T  4109518 aagaacaaacgtctacgccttcacaggcttgacgcttggtggactgt 4109472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 5168813 - 5168855
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtgga 535  Q
    |||||||||| |||||||||||| || ||||||||||||||||    
T  5168813 aagaacaaacatctacgccttaaaagtcttgacgtttggtgga 5168855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 45108390 - 45108344
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    |||||||||||||||| |||||| || ||||||| ||||||||||||    
T  45108390 aagaacaaacgtctacaccttaacagccttgacgcttggtggactgt 45108344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 537
Target Start/End: Complemental strand, 45108461 - 45108417
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggact 537  Q
    |||||||||||||||| |||||| || ||||||| ||||||||||    
T  45108461 aagaacaaacgtctacaccttaacaggcttgacgcttggtggact 45108417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 20112 - 20158
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  20112 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 20158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 20040 - 20097
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgtaaactagtaca 550  Q
    |||||||||||| |||||||||| || ||||||| ||||||||||||  |||||||||    
T  20040 aagaacaaacgtttacgccttaacaggcttgacgcttggtggactgtggactagtaca 20097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 20184 - 20230
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||| | ||||||||||||    
T  20184 aagaacaaacgtctacgccttaacaggcttgatgcttggtggactgt 20230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 12612474 - 12612428
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  12612474 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 12612428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 17834626 - 17834672
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  17834626 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgt 17834672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 12599850 - 12599804
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||| ||||||| || ||||||| ||||||||||||    
T  12599850 aagaacaaacgtctatgccttaacaggcttgacgcttggtggactgt 12599804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 12599994 - 12599948
Alignment:
Q  493 aagaacaaacgtctacgccttaatagacttgacgtttggtggactgt 539  Q
    ||||||||||||||||||||||| || ||||| | ||||||||||||    
T  12599994 aagaacaaacgtctacgccttaacaggcttgatgcttggtggactgt 12599948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 5539227 - 5539162
Alignment:
Q  470 gactggtacaagtcgatcctatgaagaacaaacgtctacgccttaatagacttgacgtttggtgga 535  Q
    ||||||| || ||||||  |||||||||||||||||||||  |||| ||||||| || ||||||||    
T  5539227 gactggttcaggtcgatgttatgaagaacaaacgtctacgttttaacagacttgtcgcttggtgga 5539162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University