View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21402_low_4 (Length: 426)
Name: NF21402_low_4
Description: NF21402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21402_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 407
Target Start/End: Original strand, 40764368 - 40764766
Alignment:
| Q |
9 |
gattattctcatctatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagct |
108 |
Q |
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| T |
40764368 |
gattattctcatcgatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccccattatcagct |
40764467 |
T |
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| Q |
109 |
gaatgccaattcaaatactttgttttttatggtaataaacttatttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggt |
208 |
Q |
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| T |
40764468 |
gaatgccaattcaaatactttgttttttagggtaataaacttatttttttagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggt |
40764567 |
T |
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| Q |
209 |
gcttttgcttttgttgtggcagaaagaataacttattatctgcattattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcag |
308 |
Q |
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| T |
40764568 |
gcttttgcttttgttgtggcagaaagaataacttattatctgcattattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcag |
40764667 |
T |
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| Q |
309 |
tggttactcgacaactgccttgaggatatggaatttatggctgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgactt |
407 |
Q |
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| T |
40764668 |
tggttactcgacaactgccttgaggatatggaatttatggctgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgactt |
40764766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 52 - 407
Target Start/End: Original strand, 42912038 - 42912395
Alignment:
| Q |
52 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
151 |
Q |
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| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatact--gttttttagggtaataaactta |
42912135 |
T |
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| Q |
152 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatggttggtgcttttgcttttgttgtggcagaaagaataacttattatctgc |
251 |
Q |
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| T |
42912136 |
tttttctagtgc----aatcttgaactgccaacttcacccctactcctatggttggtgcttttgcttttgctgtggcagaac-aataatttaatatttgc |
42912230 |
T |
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| Q |
252 |
attattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcagtggttactcgacaactgccttgaggatatggaatttatggc-- |
349 |
Q |
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| T |
42912231 |
attattgtgtaggatgatatgaagtgcgccgaggcatatgtgaaatttttgtgtcggtggttacttgacaactgccttgaggatatggaatttatggccg |
42912330 |
T |
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| Q |
350 |
-------tgacaaaggttgcattgatcgtttgaaaatggttgcctccacccccttcattcgactt |
407 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42912331 |
acaagtttgataaaggttgcattgatcgtttgaaaatggttgcctcaacccccttcattcgactt |
42912395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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