View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_high_6 (Length: 230)
Name: NF21403_high_6
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 742413 - 742210
Alignment:
| Q |
13 |
gtgagatgaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtt |
112 |
Q |
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| T |
742413 |
gtgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtt |
742314 |
T |
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| Q |
113 |
taactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742313 |
taactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaa |
742214 |
T |
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| Q |
213 |
atgt |
216 |
Q |
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|||| |
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| T |
742213 |
atgt |
742210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 42449543 - 42449340
Alignment:
| Q |
13 |
gtgagatgaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtt |
112 |
Q |
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| T |
42449543 |
gtgagaagaaggccaaacagtgtgctacttttggaagaagtggagaaagcacatacttcagtaatcaacaaattactttatatcttagaggatggaagtt |
42449444 |
T |
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| Q |
113 |
taactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||| |
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| T |
42449443 |
taactgatggacaaggcagaactgtggattttacgaacatggtcattatcatgacctcgaaccttggtgccgatcatctcttaagtggactttcaggaaa |
42449344 |
T |
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| Q |
213 |
atgt |
216 |
Q |
| |
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|||| |
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| T |
42449343 |
atgt |
42449340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 740318 - 740117
Alignment:
| Q |
20 |
gaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactga |
119 |
Q |
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|||||||| ||| |||| ||||||| || ||||||||||||||||||| |||||| | |||| || ||| | ||||| | ||||||| ||||||| |
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| T |
740318 |
gaaggccacacagtgtgatacttttagagcaagtggagaaagcacatatatctgtattaaacactctgcttgaagtcttaaattatgggaggctaactga |
740219 |
T |
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| Q |
120 |
tggacaaggcagaactgtggattttacga-----acacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaat |
214 |
Q |
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| T |
740218 |
tggacaaggcagaactgtggattttaggataggaacacagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaat |
740119 |
T |
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| Q |
215 |
gt |
216 |
Q |
| |
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|| |
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| T |
740118 |
gt |
740117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 10046583 - 10046757
Alignment:
| Q |
38 |
tacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgt |
137 |
Q |
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||||||| || ||||| ||||||||||||| |||||| |||||| || ||| | || |||| || || || ||||||||||| ||||| |||||||| |
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| T |
10046583 |
tactttttgatgaagtagagaaagcacatacatctgtattcaacactctgcttcaagtcctagatgacggaagattaactgatggccaaggaagaactgt |
10046682 |
T |
|
| Q |
138 |
ggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaa |
212 |
Q |
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| T |
10046683 |
ggattttaggaacacagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaa |
10046757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 38708308 - 38708365
Alignment:
| Q |
158 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatg |
215 |
Q |
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| T |
38708308 |
ttatcatgacctcaaaccttggtgccgagcatctcataagtggactttcaggaaaatg |
38708365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 45468309 - 45468422
Alignment:
| Q |
103 |
gatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggac |
202 |
Q |
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| T |
45468309 |
gatgggaggttgactgacggacaaggcagaactgtggattttagaaacactgtgatcatcatgacctctaaccttggtgctgagcatctcttgagtggac |
45468408 |
T |
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| Q |
203 |
tttcaggaaaatgt |
216 |
Q |
| |
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|||||||||||||| |
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|
| T |
45468409 |
tttcaggaaaatgt |
45468422 |
T |
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