View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21403_low_1 (Length: 603)
Name: NF21403_low_1
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 281 - 519
Target Start/End: Original strand, 11155530 - 11155768
Alignment:
| Q |
281 |
tgcgtcaaaaaataatgtgatgcataattttcacagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155530 |
tgcgtcaaaaaataatgtgatgcataattttcacagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttc |
11155629 |
T |
|
| Q |
381 |
caaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155630 |
caaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc |
11155729 |
T |
|
| Q |
481 |
tcttgctgctcaagcatcctctgttctggtacacatgcc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11155730 |
tcttgctgctcaagcatcctctgttctggtacatatgcc |
11155768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 11155296 - 11155458
Alignment:
| Q |
25 |
gagatgaagagaaaataaatgtagaagtagaatgtacgtaagaaaagtaagagagatgcaaatataattgttcggnnnnnnnntagggttctaataattg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11155296 |
gagatgaagagaaaataaatgtagaagtagaatgtacgtaagaaaagtaagagagatgcaaata---------------------gggttctaataattg |
11155374 |
T |
|
| Q |
125 |
tcttgcacttctttttgttatattttataaaattatgcattaactagtattgtctaaaaattgtaggccaagtatatgaatcaa |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11155375 |
tcttgcacttcttttctttatattttataaaattatgcattaactagtattttctaaaaattgtaggccaagtatatgaatcaa |
11155458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 490
Target Start/End: Original strand, 11145245 - 11145422
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| |||||||| || ||||||||||| || |||||||| || || || |||||| | ||||||||||| | ||||| || ||||||||||||||| |
|
|
| T |
11145245 |
acagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgtt |
11145344 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgct |
490 |
Q |
| |
|
|| ||||| |||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11145345 |
gtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgct |
11145422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 489
Target Start/End: Original strand, 11136946 - 11137122
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||| |||| ||| || || || |||||| ||||||| ||||||| ||||||| || |||||||||||||| |
|
|
| T |
11136946 |
acagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgtt |
11137045 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgc |
489 |
Q |
| |
|
|| ||||| |||||||| || | |||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11137046 |
gtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattcttgccctttctgc |
11137122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 373 - 511
Target Start/End: Original strand, 11171230 - 11171368
Alignment:
| Q |
373 |
agcttttccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgat |
472 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||| ||||| |||||||| || | |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11171230 |
agcttttggaaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgat |
11171329 |
T |
|
| Q |
473 |
attcttgctcttgctgctcaagcatcctctgttctggta |
511 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
11171330 |
attcttgctcttgctgctgaaatttcctctgttctggta |
11171368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 515 - 603
Target Start/End: Original strand, 11155797 - 11155884
Alignment:
| Q |
515 |
atgcctcgttcatcattaaaatttcaaatgcaatgtttaaatgattctatttctgttctgagtatataatactataatatgtgcatttg |
603 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11155797 |
atgcctcgttgatcattaaa-tttcaaatgcaatatttaaatgattctatttctgttctgagtatataatactataatatatgcatttg |
11155884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 490
Target Start/End: Original strand, 11149179 - 11149356
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| |||| ||| | || || |||||| | ||||||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
11149179 |
acagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgtt |
11149278 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgct |
490 |
Q |
| |
|
|| ||||| |||||||| ||| | |||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
11149279 |
gtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattcttgccctttctgct |
11149356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 414
Target Start/End: Original strand, 11200120 - 11200215
Alignment:
| Q |
319 |
atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgt |
414 |
Q |
| |
|
||||||||| ||||||||| ||||||| || || || ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
11200120 |
atgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgt |
11200215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 380 - 511
Target Start/End: Original strand, 11177243 - 11177374
Alignment:
| Q |
380 |
ccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttg |
479 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||| ||||||||||| || | |||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11177243 |
ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttg |
11177342 |
T |
|
| Q |
480 |
ctcttgctgctcaagcatcctctgttctggta |
511 |
Q |
| |
|
| ||| ||||| || ||| |||| ||||||| |
|
|
| T |
11177343 |
ccctttctgctgaaatatcttctgatctggta |
11177374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 490
Target Start/End: Complemental strand, 10794173 - 10794016
Alignment:
| Q |
333 |
ttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgc |
432 |
Q |
| |
|
||||| ||||||| |||||||| ||||| ||||||| ||||||| | ||||||| |||||| ||||||||||| | ||||| |||| ||||| || | |
|
|
| T |
10794173 |
ttttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttgcaagttgtgaatcgtatcaagacaga |
10794074 |
T |
|
| Q |
433 |
tatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgct |
490 |
Q |
| |
|
| |||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10794073 |
cgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgct |
10794016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 11110094 - 11110259
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| |||||||| || ||||||||||| || || || || || || || |||||| | ||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
11110094 |
acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt |
11110193 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattctt |
478 |
Q |
| |
|
| ||||| ||||| ||| | |||| ||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
11110194 |
atcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt |
11110259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 313 - 511
Target Start/End: Original strand, 11095640 - 11095838
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| ||| ||| || ||||| || ||| | || ||||||| | ||||| ||||| |||||||||||| |
|
|
| T |
11095640 |
acagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgtt |
11095739 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgctcaagcatcctctgttctggta |
511 |
Q |
| |
|
||||| || ||||| || || | |||| || ||||| ||| ||||||||||||||||||||| || |||| ||||||| | | |||||||||||| |
|
|
| T |
11095740 |
gtaaaccaaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattcttactattgcagctcaagtagcttctgttctggta |
11095838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 477
Target Start/End: Original strand, 11118099 - 11118262
Alignment:
| Q |
314 |
cagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttg |
413 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||| |||| || | || |||||| | ||| |||||||| ||||| |||||| | ||||||||| |
|
|
| T |
11118099 |
cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta |
11118198 |
T |
|
| Q |
414 |
taaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattct |
477 |
Q |
| |
|
| |||||||| ||||||| | |||| | ||||||||| | ||||||||||||||||||||| |
|
|
| T |
11118199 |
tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct |
11118262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 511
Target Start/End: Original strand, 11104099 - 11104297
Alignment:
| Q |
313 |
acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt |
412 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| |||| ||| || || || |||||| | || |||||||| | ||||| |||| ||||||||||| |
|
|
| T |
11104099 |
acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgtt |
11104198 |
T |
|
| Q |
413 |
gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgctcaagcatcctctgttctggta |
511 |
Q |
| |
|
|| ||| | ||||| || || | ||| | ||||||||||| ||||||||||||||||||||| || |||| ||| ||| ||| ||| |||||||| |
|
|
| T |
11104199 |
gtgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta |
11104297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University