View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_2 (Length: 477)
Name: NF21403_low_2
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 33499149 - 33499603
Alignment:
| Q |
20 |
caaactcgatggaggaaacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatga |
119 |
Q |
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| T |
33499149 |
caaactcgatggaggaaacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatga |
33499248 |
T |
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| Q |
120 |
attttattttcct-cctatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttt |
218 |
Q |
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| T |
33499249 |
attttattttccttccgatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttt |
33499348 |
T |
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| Q |
219 |
tgtgtttgcttttccaatattgtaaactgcatatggtttatttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccatagtt |
318 |
Q |
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| T |
33499349 |
tgtgtttgcttttctaatattgtaaactgcatatggtttatttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccttcgtt |
33499448 |
T |
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| Q |
319 |
tgaagtaagtatgtcatgatgtatatcgtaaaatatgaagcttgtcgggatttaga-nnnnnnnnnaggcaaaacaagcttattaaccttattattaggt |
417 |
Q |
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| T |
33499449 |
tgaagtaagtatgtcatgatgtatatcgtaaaatatgaagcttgtcaggatttagatttttttattaggcaaaacaagcttattaaccttattattaggt |
33499548 |
T |
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| Q |
418 |
gaacctcttctataaatagtttggttaaaccttata--tgtccttccctttgcta |
470 |
Q |
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| T |
33499549 |
gaacctcttctataaatagtttggttaaaccttatatgtgtccttccctttgcta |
33499603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 351
Target Start/End: Original strand, 33486210 - 33486393
Alignment:
| Q |
161 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttccaatattgtaaactgcatatggttta |
258 |
Q |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttccggt---gtaaactgcataaggttta |
33486306 |
T |
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| Q |
259 |
tttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccatagtttgaagtaagtatgtcatgatgtatatcgtaaaa |
351 |
Q |
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| T |
33486307 |
tttgaattcataaaatttacttttaaaatta--acaaacggaatatccatttttatcgtttg----aagtatgtcatgatttatatcgtaaaa |
33486393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 33486144 - 33486212
Alignment:
| Q |
32 |
aggaaacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
100 |
Q |
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| T |
33486144 |
aggaaacatacaagcatgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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