View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_3 (Length: 358)
Name: NF21403_low_3
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 1514341 - 1514675
Alignment:
| Q |
13 |
aatatcaacgaaatagcatttaaaatattctaactttatttannnnnnn----ggtacaaaatattctaactttattattgctagcaatagtgaatcttg |
108 |
Q |
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| T |
1514341 |
aatatcaacgaaatagcatttaaaatattctaactttattttttatttttttgggtacaaaatattctaactttattattgcttacaatagtgaatcttg |
1514440 |
T |
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| Q |
109 |
aatatcttttnnnnnnnnngaattagaaattaatatattgcttataaccagtgaaataatattttcctatatcattttaaagtacaaatgtttacaaata |
208 |
Q |
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| T |
1514441 |
aatatcttttaagaaaaaagaattagaaattaatatattgcttataaccagtgaaataatacactcctatatcattttaaagtacaaatgtttataaata |
1514540 |
T |
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| Q |
209 |
attcagtaattcnnnnnnntgatcattaatttactaatnnnnnnngttcctcttaattgaaaccctataatttatcaatgtaattagaagctcccaaaag |
308 |
Q |
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||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514541 |
attgagtaattcaaaaaaatgatcattaatttattaataaaaaa-gttcctcttaattgaaaccctataatttatcaatgtaattagaagctcccaaaag |
1514639 |
T |
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| Q |
309 |
acatggtcaatattgtaactttgtcgtgtcatattt |
344 |
Q |
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|||||||||| | ||||||||||||||||||||||| |
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| T |
1514640 |
acatggtcaaaactgtaactttgtcgtgtcatattt |
1514675 |
T |
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