View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_5 (Length: 305)
Name: NF21403_low_5
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 33070103 - 33070376
Alignment:
| Q |
10 |
aagaatattgagagtttctagtagtggttgaccacataaagggagagatagaggctgattcaatctcattgagggagaagaagagcgacccaaatagtga |
109 |
Q |
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| T |
33070103 |
aagaaaattgagagtttctagtagtggttgaccacataaagggacagatagaggatgattcaatttcatttagggagaagaagagcgacccaaacagtga |
33070202 |
T |
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| Q |
110 |
gacaaatgtaataggaaaacaaattgacaatggattgtttcaaggatattttggtagaaacacacggtatatttgtttctgtttaaactaatccttnnnn |
209 |
Q |
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| T |
33070203 |
gacaaatgtaatagggaaacaaattgacaatggattgtttcaaggatattttggtagaaacacacggtatatttgtttctgtttaaactaatcctt---- |
33070298 |
T |
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| Q |
210 |
nnnnnnnnnnnnntgacatgctatagaaagtaactgactaaggtccacaagtggtccttttaaattgatgtccatgtt |
287 |
Q |
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| T |
33070299 |
aaaaaaaaaaaaatgacatgctatagaaagtaactgactaaggtccacaagtggtccttttaaattgaggtccatgtt |
33070376 |
T |
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