View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_6 (Length: 239)
Name: NF21403_low_6
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 742606 - 742824
Alignment:
| Q |
1 |
tcaatcttgacacatggtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaag |
100 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742606 |
tcaatctggacacatagtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaag |
742705 |
T |
|
| Q |
101 |
ttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctccaccttaattaatacagc |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
742706 |
---ttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctctccacc----ttaatacagc |
742798 |
T |
|
| Q |
201 |
gttagcaacgtcatttactgcttgat |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
742799 |
gttagcaacgtcatttactgcttgat |
742824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42449862 - 42450080
Alignment:
| Q |
1 |
tcaatcttgacacatggtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaag |
100 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
42449862 |
tcaatcttgacagatagtgttgttccatgtactccgacatgttcattctcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaag |
42449961 |
T |
|
| Q |
101 |
ttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctccaccttaattaatacagc |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||| |
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| T |
42449962 |
---ttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccgcc----tcaatacagt |
42450054 |
T |
|
| Q |
201 |
gttagcaacgtcatttactgcttgat |
226 |
Q |
| |
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|||||||||| |||||||||| |||| |
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| T |
42450055 |
gttagcaacggcatttactgcatgat |
42450080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 10046149 - 10045987
Alignment:
| Q |
24 |
tccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaagttcttctgttttaccaacaccag |
123 |
Q |
| |
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|||||||| |||||||||| | ||| |||| ||| ||||||| |||||||||||||| ||||||||| |||||||||||| |||||||| ||||||| |
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| T |
10046149 |
tccatgtattccgacatgtcaagtctaaccatctgattttcattatcaaagagttgttgagcaagagccttagcaagttct---gttttaccgacaccag |
10046053 |
T |
|
| Q |
124 |
ttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctccacctta |
189 |
Q |
| |
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|||||| ||||||||||||||||||| |||| ||||| |||||||||| |||||||||| |||||| |
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| T |
10046052 |
ttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctcgacctta |
10045987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 38707942 - 38707786
Alignment:
| Q |
23 |
ttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaagttcttctgttttaccaacacca |
122 |
Q |
| |
|
||||||||| |||||||||| | ||| | || || ||||||||| ||||||||| || ||||||||| |||||||||||| ||||||||||||| | |
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| T |
38707942 |
ttccatgtattccgacatgtcgagtctaatcatatgattttcatcagcaaagagttattgagcaagagccttagcaagttct---gttttaccaacacta |
38707846 |
T |
|
| Q |
123 |
gttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctctc |
182 |
Q |
| |
|
|||||| |||||||||||||| |||| |||| | ||||||||||| ||||||| ||||| |
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|
| T |
38707845 |
tttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctc |
38707786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 45468025 - 45467848
Alignment:
| Q |
1 |
tcaatcttgacacatggtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaag |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| || || || |||||||| || ||||| |
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| T |
45468025 |
tcaatcttgatacagagtgttgttccatgtattccgacatgtcaattctcaccaactgattttcatcatcaaatagctgctctgcaagagcctttgcaag |
45467926 |
T |
|
| Q |
101 |
ttcttctgttttaccaacaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctct |
181 |
Q |
| |
|
|| ||||||||||||||||| |||| |||||||| |||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
45467925 |
ctca---gttttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctct |
45467848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 43065205 - 43065032
Alignment:
| Q |
7 |
ttgacacatggtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaagttcttc |
106 |
Q |
| |
|
|||| |||| || |||||||||||| ||||||||||| |||||||| ||| | |||||||||||||| |||||||| ||||||| || |||||| | |
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| T |
43065205 |
ttgatacatcgtattgttccatgtattccgacatgttaattctcactaaccgattttcatcatcaaaaagttgttccacaagagcctttgcaagtcca-- |
43065108 |
T |
|
| Q |
107 |
tgttttaccaacaccagttggactaaggaataggaagga--accaattggatgttgaggtcttcctaaaccagctct |
181 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
43065107 |
-gttttaccaacaccagttggacaaaggaacatgaaggaacaccttttggatgttgagctcttcctaaaccagctct |
43065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 43064652 - 43064813
Alignment:
| Q |
17 |
gtgttgttccatgtactccgacatgttcattctcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaagttcttctgttttacca |
116 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| || ||| | ||||||||||||| |||||||| |||||||| | |||||||| ||||||||| |
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| T |
43064652 |
gtgttgttccatgtattccgacatgtcaattctaactaaccgattttcatcatcaagaagttgttctgcaagagccattgcaagttca---gttttacca |
43064748 |
T |
|
| Q |
117 |
acaccagttggactaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccagctct |
181 |
Q |
| |
|
|||||| |||||| |||||||||||||| || |||| ||||||| |||||||||||||||||| |
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|
| T |
43064749 |
acaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctct |
43064813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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