View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_7 (Length: 239)
Name: NF21403_low_7
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33401520 - 33401299
Alignment:
| Q |
1 |
tatcttcgtcactatataannnnnnncgtgttaaatataattttcttgtcgacattttgagaaaattaatcttgtttgtgttgatgtggaatgaaacagt |
100 |
Q |
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| T |
33401520 |
tatctttgtcactatataatttttttcgtgttaaatataattttcttgtcgacattttgagaaaattaatcttgtttgtgttgatgtggaatgaaacagt |
33401421 |
T |
|
| Q |
101 |
tgagtgaacaagaggatctgattgtatggatgagaacagcagcactgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagctaacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401420 |
tgagtgaacaagaggatctgattgtatggatgagaacagcagcactgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagctaacga |
33401321 |
T |
|
| Q |
201 |
tgaaataactgtagtaatagag |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
33401320 |
tgaaataacggtagtaatagag |
33401299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 43600904 - 43601010
Alignment:
| Q |
97 |
cagttgagtgaacaagaggatctgattgtatggatgagaacagcagcactgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagcta |
196 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| | || || ||||||||| | || |||||||| || ||| ||||||| || |
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| T |
43600904 |
cagttgagtgaacaagaggatctgattgtttggatgagaacagcagcattaccaacgttcagaaaactgtatgggaagatagagtccgatcttgaagtta |
43601003 |
T |
|
| Q |
197 |
acgatga |
203 |
Q |
| |
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||||||| |
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| T |
43601004 |
acgatga |
43601010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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