View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21403_low_9 (Length: 216)
Name: NF21403_low_9
Description: NF21403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21403_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 48972027 - 48971842
Alignment:
| Q |
18 |
cctttatgatcaaaaccatattcttcttctgcctctttgagaagctgcatgaagagtgggtgattgaagtaaatcactggaaccacgaacctttgttgat |
117 |
Q |
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| T |
48972027 |
cctttatgatcaaaaccatattcttcttctgcctctttgagaagctgcatgaagagtgggtgattgaagtaaatcactggaaccacgaacctttgttgat |
48971928 |
T |
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| Q |
118 |
cttctccttgaccaaccttgattgcaagacacccttttggtacacctctgaactcttgcttcttcccatgcagaagagatcctttg |
203 |
Q |
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| T |
48971927 |
cttctccttgaccaaccttgattgcaagacacccttttggtacacctctgaactcttgcttcttcccatgcagaagaaatcctttg |
48971842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 9278997 - 9279157
Alignment:
| Q |
18 |
cctttatgatcaaaaccatattcttcttctgcctctttgagaagctgcatgaagagtgggtgattgaagtaaatcactggaaccacgaacctttgttgat |
117 |
Q |
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| T |
9278997 |
cctttttgatcaaatccatattcttcttctgcttctttcaatagttgaatgaaaagagggtgattgaagtacatcaccggcacaacaaacctttgttgtt |
9279096 |
T |
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| Q |
118 |
cttctccttgaccaaccttgattgcaagacacccttttggtacacctctgaactcttgctt |
178 |
Q |
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| T |
9279097 |
cttctcctagaccaacttttatcgccataaacccttttggaacacctttgaactcttgctt |
9279157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 40770162 - 40770130
Alignment:
| Q |
16 |
cacctttatgatcaaaaccatattcttcttctg |
48 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
40770162 |
caccttcatgatcaaaaccatattcttcttctg |
40770130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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