View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21404_high_8 (Length: 256)

Name: NF21404_high_8
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21404_high_8
NF21404_high_8
[»] chr3 (5 HSPs)
chr3 (1-248)||(29223266-29223516)
chr3 (96-248)||(52616421-52616573)
chr3 (95-239)||(41523489-41523633)
chr3 (180-248)||(11758939-11759007)
chr3 (151-248)||(51846889-51846986)
[»] chr2 (2 HSPs)
chr2 (97-239)||(15573349-15573491)
chr2 (159-248)||(29075916-29076005)
[»] chr4 (2 HSPs)
chr4 (97-248)||(13736514-13736665)
chr4 (97-239)||(26889294-26889436)
[»] chr7 (4 HSPs)
chr7 (97-248)||(8942945-8943096)
chr7 (179-248)||(38656963-38657032)
chr7 (183-248)||(13926055-13926119)
chr7 (97-166)||(15746664-15746733)
[»] chr1 (1 HSPs)
chr1 (180-248)||(27052624-27052692)
[»] chr8 (1 HSPs)
chr8 (97-162)||(45483073-45483138)
[»] chr6 (4 HSPs)
chr6 (97-166)||(1569578-1569647)
chr6 (183-248)||(629884-629949)
chr6 (191-248)||(2196936-2196992)
chr6 (183-231)||(24016767-24016815)
[»] chr5 (2 HSPs)
chr5 (188-248)||(22292705-22292764)
chr5 (182-248)||(13578929-13578995)
[»] scaffold1603 (1 HSPs)
scaffold1603 (191-248)||(192-248)
[»] scaffold0031 (1 HSPs)
scaffold0031 (183-248)||(91205-91269)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 29223516 - 29223266
Alignment:
Q  1 caacatcaactttgatattaccaaaaggattctcaattataggtggaaccttaactttggcatattgctgagattttccgcaactatagatgcaatggtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  29223516 caacatcaactttgatattaccaaaaggattctcaattataggtggaaccttaactttggcatattgctgagattttccgcaactacaggtgcaacggtg 29223417  T
Q  101 acatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaa--cacattttttatctgctggaata 198  Q
    |||||||||||| | |||||||| |||| ||||||||| | ||||||||  |||||  |||| ||||||||||||  |||||||||||||||| ||||||    
T  29223416 acatttagggtgtataaggggaagatttatgcatcatgcataagggaaattttttttgacagttggtggtaaaaacacacattttttatctgcaggaata 29223317  T
Q  199 ttttaatgaaacatattatattacaaaatattcc-atttattatctctgct 248  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  29223316 ttttaatgaaacatattatattgtaaaatattccaatttattatttctgct 29223266  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 52616573 - 52616421
Alignment:
Q  96 tggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctgga 195  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| ||||||   ||||||||| |||| ||| ||||||||  || |||||| ||||||||    
T  52616573 tggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaaggcttagatttttggacaggtggcggtaaaaaagcaatttttacctgctgga 52616474  T
Q  196 atattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||||||||||||| ||||||||||  | ||||||||||||||| | ||||||    
T  52616473 atattttaatgaaaaatattatattgtataatattccatttattgtttctgct 52616421  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 41523633 - 41523489
Alignment:
Q  95 atggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctgg 194  Q
    |||||| |||||||||||||||||| ||| ||||||| | |||| ||||| ||| |||||||| |||||||| ||||||||  || |||||| ||| ||     
T  41523633 atggtggcatttagggtgcacaaggagaagatttgtgtaccatgcacaagtgaacgatttttggacagctggcggtaaaaaagcaatttttacctgttga 41523534  T
Q  195 aatattttaatgaaacatattatattacaaaatattccatttatt 239  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||    
T  41523533 aatattttaatgaaaaatattatattgtaaaatattccatttatt 41523489  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 11758939 - 11759007
Alignment:
Q  180 ttttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||| ||||||||| ||||||||||||||||| |||||  ||||||||||||||||| | ||||||    
T  11758939 ttttttacctgctggaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgct 11759007  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 51846889 - 51846986
Alignment:
Q  151 atttttgaacagctggtggtaaaaacacattttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||| |||| ||| ||||||||  |  |||||| |||||||||||||||||| ||| ||||||||||  |||||||| |||||||| | ||||||    
T  51846889 atttttggacaggtggcggtaaaaattccctttttacctgctggaatattttaatcaaaaatattatattgaaaaatatttcatttattgtttctgct 51846986  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 15573491 - 15573349
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctggaa 196  Q
    |||| |||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||| |||| ||| ||||||||||| ||||||| |||||||||    
T  15573491 ggtggcatttaggatgcacaaggggaagatttgtgcaccatgcacaagtgaaagatttttggacagttggcggtaaaaacaccttttttacctgctggaa 15573392  T
Q  197 tattttaatgaaacatattatattacaaaatattccatttatt 239  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  15573391 tattttaatgaaacatattatattgtaaaatattccatttatt 15573349  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 29076005 - 29075916
Alignment:
Q  159 acagctggtggtaaaaacacattttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||||||| ||||||||   |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  29076005 acagctggcggtaaaaattgattttttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 29075916  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 13736514 - 13736665
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctggaa 196  Q
    |||| |||||||||||||||| ||||| ||||||||| |||| ||||| |||||||||||| |||||| | ||||||||||| ||||||  || ||||||    
T  13736514 ggtggcatttagggtgcacaaagggaagatttgtgcaccatgcacaagtgaaagatttttggacagctagcggtaaaaacaccttttttcccttctggaa 13736613  T
Q  197 tattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  13736614 tattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 13736665  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 26889436 - 26889294
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctggaa 196  Q
    |||| |||||||||||||||||||||| ||||||||| |||| |||||    ||||||||| | || ||| ||||||||  |  |||||| |||||||||    
T  26889436 ggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaagtcttagatttttggataggtggcggtaaaaattccctttttacctgctggaa 26889337  T
Q  197 tattttaatgaaacatattatattacaaaatattccatttatt 239  Q
    ||||||||| ||| ||||||||||  |||||||||||||||||    
T  26889336 tattttaatcaaaaatattatattgtaaaatattccatttatt 26889294  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 8942945 - 8943096
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctggtggtaaaaacacattttttatctgctggaa 196  Q
    |||| |||||||||||||||||||||| ||||||||| |||| |||||    ||||||||| |||| ||| ||||||||  |  |||||| |||||||||    
T  8942945 ggtggcatttagggtgcacaaggggaagatttgtgcaccatgcacaagtcttagatttttggacaggtggcggtaaaaattccctttttacctgctggaa 8943044  T
Q  197 tattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||||| ||| ||||||||||  ||||||||||||||||| | ||||||    
T  8943045 tattttaatcaaaaatattatattgtaaaatattccatttattgtttctgct 8943096  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 38656963 - 38657032
Alignment:
Q  179 attttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||||||| |||||||||||||||||||||||||||||||||  ||||||||  ||||||| | ||||||    
T  38656963 attttttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgct 38657032  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 13926119 - 13926055
Alignment:
Q  183 tttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||| | ||||||    
T  13926119 tttacctgctggaatattttaataaaacatattatattataaaatatt-catttattgtttctgct 13926055  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 15746733 - 15746664
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctgg 166  Q
    |||| |||||||  |||||||||| || ||||||||| |||| |||||||||||||||||| ||||||||    
T  15746733 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaagggaaagatttttggacagctgg 15746664  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 27052692 - 27052624
Alignment:
Q  180 ttttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  27052692 ttttttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 27052624  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 45483138 - 45483073
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacag 162  Q
    |||| |||||||||||||||||||||| ||||||||| ||   ||||| |||||||||||||||||    
T  45483138 ggtggcatttagggtgcacaaggggaagatttgtgcaccaaacacaagtgaaagatttttgaacag 45483073  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 1569578 - 1569647
Alignment:
Q  97 ggtgacatttagggtgcacaaggggaaaatttgtgcatcatgtacaagggaaagatttttgaacagctgg 166  Q
    |||| |||||||  |||||||||| || ||||||||| |||| |||||||||||||||||| ||||||||    
T  1569578 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaagggaaagatttttggacagctgg 1569647  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 629884 - 629949
Alignment:
Q  183 tttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||| |||||||||||||||||| ||| ||||||||||  | ||||||||||||||| | ||||||    
T  629884 tttacctgctggaatattttaatcaaaaatattatattgtataatattccatttattgtttctgct 629949  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 2196992 - 2196936
Alignment:
Q  191 ctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||||    
T  2196992 ctggaatattttaatgaaacatattatattgtaaaatatt-catttattgtttctgct 2196936  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 24016767 - 24016815
Alignment:
Q  183 tttatctgctggaatattttaatgaaacatattatattacaaaatattc 231  Q
    |||| |||||||| ||||||||||||||||||||||||  |||||||||    
T  24016767 tttacctgctggattattttaatgaaacatattatattgtaaaatattc 24016815  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 22292764 - 22292705
Alignment:
Q  188 ctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||||    
T  22292764 ctgctggaatattttaatgaaacatattatattgtaaaatatt-catttattgtttctgct 22292705  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 13578995 - 13578929
Alignment:
Q  182 ttttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||| ||||||||||||| |||| ||| |||||||| |  ||||||||||||||||||| ||||||    
T  13578995 ttttacctgctggaatattctaatcaaaaatattataatgtaaaatattccatttattatttctgct 13578929  T

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Target: scaffold1603 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 248 - 192
Alignment:
Q  191 ctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||||    
T  248 ctggaatattttaatgaaacatattatattgtaaaatatt-catttattgtttctgct 192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 91269 - 91205
Alignment:
Q  183 tttatctgctggaatattttaatgaaacatattatattacaaaatattccatttattatctctgct 248  Q
    |||| |||||||| ||||||||||||||||||||||||  |||||||| |||||||| | ||||||    
T  91269 tttacctgctggattattttaatgaaacatattatattgtaaaatatt-catttattgtttctgct 91205  T

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