View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21404_low_1 (Length: 638)
Name: NF21404_low_1
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21404_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 144 - 620
Target Start/End: Complemental strand, 29461791 - 29461312
Alignment:
| Q |
144 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461791 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
29461692 |
T |
|
| Q |
244 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacgtgatattgtggtttttgaaaaaccttgaatttactcatgtttgggca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29461691 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacatgatattgtggtttttaaaaaaccttgaatttactcatgtttgggca |
29461592 |
T |
|
| Q |
344 |
attcaagtcatagcataagnnnnnnnn---gtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
440 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461591 |
attcaagtcatagcataaaaaaaaaaaaaagtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
29461492 |
T |
|
| Q |
441 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461491 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
29461392 |
T |
|
| Q |
541 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaat |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461391 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaat |
29461312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 409 - 596
Target Start/End: Complemental strand, 29426256 - 29426069
Alignment:
| Q |
409 |
taagaatgaagtaactagttatgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
508 |
Q |
| |
|
||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426256 |
taagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
29426157 |
T |
|
| Q |
509 |
gcaaaaccatttaacccattaagtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaaga |
596 |
Q |
| |
|
||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
29426156 |
gcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaaga |
29426069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 29461924 - 29461866
Alignment:
| Q |
11 |
cacagaccaagccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
69 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461924 |
cacagaccaaaccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
29461866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
445 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
498 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
455 |
gtggattttccagagccagaaggacccataatagcca |
491 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 36068412 - 36068327
Alignment:
| Q |
455 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
540 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |||| ||||||| |||| |
|
|
| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
36068327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University