View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21404_low_2 (Length: 356)
Name: NF21404_low_2
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21404_low_2 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 45074785 - 45074450
Alignment:
| Q |
16 |
aatttcttagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagagga |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45074785 |
aatttctgagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatccaggaaattgggagagtgaaagagga |
45074686 |
T |
|
| Q |
116 |
ataacataagcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagnnnnnnngaga-------ggggatgtcaaccattcatgaggaaag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
45074685 |
ataacataagcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagaaaaaaaaaaaaaaaaaaggggatgtcaaccattcatgaggaaag |
45074586 |
T |
|
| Q |
209 |
taattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtcaaatttttgcgtggaaataatattcacat |
308 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45074585 |
taattgtaagcattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgccaaatttttgcgtggaaataatattcacat |
45074486 |
T |
|
| Q |
309 |
catgccatgtactccctttcattgatgaccatgttc |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45074485 |
catgccatgtactccctttcattgatgaccatgttc |
45074450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 181 - 344
Target Start/End: Original strand, 27366431 - 27366594
Alignment:
| Q |
181 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
280 |
Q |
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| T |
27366431 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27366530 |
T |
|
| Q |
281 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttc |
344 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
27366531 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttc |
27366594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 181 - 344
Target Start/End: Original strand, 27456778 - 27456941
Alignment:
| Q |
181 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
280 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27456778 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27456877 |
T |
|
| Q |
281 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttc |
344 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
27456878 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttc |
27456941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 27366241 - 27366380
Alignment:
| Q |
16 |
aatttcttagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaat-aagcatatctaggaaattgggagagtgaaagagg |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
27366241 |
aatttctgagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagagg |
27366340 |
T |
|
| Q |
115 |
aataacataagcttaacttcgaagttgatgtcaaggtgta |
154 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27366341 |
aatatcataagcttaacttcgaagttaatgtcaaggtgta |
27366380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 27456588 - 27456727
Alignment:
| Q |
16 |
aatttcttagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaat-aagcatatctaggaaattgggagagtgaaagagg |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
27456588 |
aatttctgagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagagg |
27456687 |
T |
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| Q |
115 |
aataacataagcttaacttcgaagttgatgtcaaggtgta |
154 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27456688 |
aatatcataagcttaacttcgaagttaatgtcaaggtgta |
27456727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 23121307 - 23121147
Alignment:
| Q |
178 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatg |
277 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23121307 |
gagaggggatgttaaccattcgtgaggaaaataattgtagtcattaggcaaaaccaaattttatcacatttttgaaagtaaaataattgggattgttatg |
23121208 |
T |
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| Q |
278 |
tcaaatttt--tgcgtggaaataatattca-catcatgccatgtactccctttcattgatg |
335 |
Q |
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|| |||| || || ||||||||||||| | ||||| ||||| |||||||| ||||||| |
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| T |
23121207 |
ctaattttttatgtgtagaaataatattcatcgtcatgtcatgtgctccctttaattgatg |
23121147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 277
Target Start/End: Original strand, 51093778 - 51093991
Alignment:
| Q |
63 |
atgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgtag-catttt |
161 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||||||||||||| | |||| |||||||||| ||||| ||||||||||| || | || |
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| T |
51093778 |
atgcatcatacaagtaataagcatatccagaaaatagggagagtgaaagaggaacatcatatgcttaacttctaagttaatgtcaaggtgcagtaaaatt |
51093877 |
T |
|
| Q |
162 |
tactttgagnnnnnnngagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaat |
261 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | |||| ||||| | | ||||||| |||||||||||| |||| | |||| |
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|
| T |
51093878 |
gactttga--aaaaaagagaggggatgtcaaccattcatgaggaaagttacggtagtcattaggatacaccaaatattatcacatttttcaaaattaaat |
51093975 |
T |
|
| Q |
262 |
aatagggattgttatg |
277 |
Q |
| |
|
||| || |||| |||| |
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| T |
51093976 |
aattggaattgatatg |
51093991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 22631218 - 22631285
Alignment:
| Q |
178 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcaca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||| |
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|
| T |
22631218 |
gagaggggatgtcaaccattcatgaggaaaataattgtagtcattaggcaaaatcaaattttatcaca |
22631285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 22631105 - 22631163
Alignment:
| Q |
91 |
aggaaattgggagagtgaaagaggaata--acataagcttaacttcgaagttgatgtca |
147 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| |
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|
| T |
22631105 |
aggaaattgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtca |
22631163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 27761 - 27816
Alignment:
| Q |
61 |
atatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaa |
116 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
27761 |
atatgcatcatacaagtaataagcatatccaataaattgggagagtgaaagaggaa |
27816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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