View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21404_low_3 (Length: 350)

Name: NF21404_low_3
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21404_low_3
NF21404_low_3
[»] chr4 (9 HSPs)
chr4 (197-335)||(10533006-10533147)
chr4 (196-268)||(43366777-43366849)
chr4 (196-276)||(21526002-21526082)
chr4 (196-300)||(9320187-9320287)
chr4 (202-270)||(54480158-54480226)
chr4 (235-335)||(26607687-26607784)
chr4 (298-331)||(17806209-17806242)
chr4 (295-335)||(43366684-43366724)
chr4 (295-335)||(54480279-54480319)
[»] chr8 (11 HSPs)
chr8 (175-335)||(6073697-6073859)
chr8 (195-335)||(18431849-18431985)
chr8 (202-267)||(10608799-10608864)
chr8 (175-270)||(5801758-5801854)
chr8 (196-263)||(40112161-40112228)
chr8 (298-335)||(284223-284260)
chr8 (298-335)||(631617-631654)
chr8 (298-335)||(817429-817466)
chr8 (233-270)||(8386794-8386831)
chr8 (298-335)||(10608718-10608755)
chr8 (296-335)||(40112274-40112313)
[»] chr1 (9 HSPs)
chr1 (176-268)||(29204802-29204894)
chr1 (196-335)||(29172693-29172822)
chr1 (178-268)||(6342248-6342339)
chr1 (197-335)||(933081-933213)
chr1 (196-269)||(47981013-47981086)
chr1 (282-327)||(52112622-52112667)
chr1 (196-302)||(1748377-1748487)
chr1 (282-335)||(47335843-47335896)
chr1 (204-244)||(15965104-15965144)
[»] chr6 (9 HSPs)
chr6 (201-335)||(6857614-6857750)
chr6 (197-269)||(2367533-2367605)
chr6 (196-335)||(33021051-33021198)
chr6 (205-270)||(29608806-29608871)
chr6 (298-335)||(2367648-2367685)
chr6 (204-267)||(9865570-9865639)
chr6 (234-335)||(18343464-18343574)
chr6 (15-63)||(19692259-19692307)
chr6 (295-335)||(29608921-29608961)
[»] chr2 (10 HSPs)
chr2 (203-335)||(43032675-43032811)
chr2 (200-335)||(7342693-7342831)
chr2 (206-335)||(4987836-4987962)
chr2 (174-335)||(3943583-3943736)
chr2 (197-244)||(3713776-3713823)
chr2 (195-249)||(13768900-13768954)
chr2 (226-305)||(3846409-3846485)
chr2 (196-242)||(11253642-11253688)
chr2 (295-331)||(3846496-3846532)
chr2 (174-253)||(32113220-32113300)
[»] chr7 (11 HSPs)
chr7 (196-270)||(37648343-37648417)
chr7 (201-335)||(21833181-21833314)
chr7 (203-335)||(8454468-8454604)
chr7 (15-84)||(45265719-45265788)
chr7 (200-270)||(24500506-24500576)
chr7 (295-335)||(37648461-37648501)
chr7 (233-335)||(25415690-25415790)
chr7 (295-335)||(319236-319276)
chr7 (295-335)||(8072083-8072123)
chr7 (200-248)||(8072191-8072239)
chr7 (295-335)||(24500432-24500472)
[»] chr3 (5 HSPs)
chr3 (192-269)||(28710356-28710433)
chr3 (202-279)||(11569659-11569736)
chr3 (196-240)||(51241247-51241291)
chr3 (300-335)||(51241122-51241157)
chr3 (282-335)||(37802267-37802320)
[»] chr5 (12 HSPs)
chr5 (242-335)||(11735385-11735475)
chr5 (234-306)||(15437943-15438012)
chr5 (295-335)||(21581792-21581832)
chr5 (207-249)||(31023032-31023074)
chr5 (196-335)||(27856430-27856571)
chr5 (296-335)||(18275433-18275472)
chr5 (296-335)||(32240374-32240413)
chr5 (301-335)||(35824331-35824365)
chr5 (299-335)||(15437897-15437933)
chr5 (204-268)||(18275322-18275386)
chr5 (234-270)||(21581718-21581754)
chr5 (199-263)||(32240471-32240534)
[»] scaffold0472 (1 HSPs)
scaffold0472 (233-276)||(12484-12527)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 10533006 - 10533147
Alignment:
Q  197 cccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgag---ggtggatgcttacac 293  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| || || |   |||||||||||||||    
T  10533006 cccgccccgaatttaacggggaaaagccgacttaaccgggtgcgggtgtgggggaaattttgatttttagtacggggccgggtgcggtggatgcttacac 10533105  T
Q  294 tcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
      |||||||||||||||||| |||||||||||||||||||||    
T  10533106 ctgccccgcacccgctttttgaaatttactttattaaatttt 10533147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 43366849 - 43366777
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagta 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  43366849 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtggggaaaatttggagttttagta 43366777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 21526002 - 21526082
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcg 276  Q
    |||||| | ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  21526002 ccccgctctgaatttaacagggaaaagccgatttaaccgggtgcgggtgtgggggaaatttggatttttagtacgggggcg 21526082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 9320187 - 9320287
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactc 295  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| ||||||||||  ||| ||||| ||||||||| ||||    
T  9320187 ccccgtcccaaatttaacggggaaaagccaatttaactaggtgcaggtgtggggaaaatatgg-tttttagtac--gggggaggg-ggatgcttaaactc 9320282  T
Q  296 gcccc 300  Q
    |||||    
T  9320283 gcccc 9320287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 54480158 - 54480226
Alignment:
Q  202 cccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||| |||||||| | |||||||||||    
T  54480158 cccgaatttaacggggaaaaaccaatttaactagatgcgggtgtggaggaaattttggtttttagtacg 54480226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 26607687 - 26607784
Alignment:
Q  235 ggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcacccgcttttttaaatttactttattaaattt 334  Q
    ||||||||||||| |||||||||| |||||| || | |||||   | |||||| || || |||||||||||| |||||| ||||||||||||||||||||    
T  26607687 ggtgcgggtgtggtggaaatttgggtttttaataagggggcg---gaggatgcgtatacccgccccgcacccactttttgaaatttactttattaaattt 26607783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 17806242 - 17806209
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaa 331  Q
    |||||||||||||||| |||||||||||||||||    
T  17806242 cccgcacccgctttttgaaatttactttattaaa 17806209  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 43366724 - 43366684
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||| |||||||||| ||||| ||||||||||||||    
T  43366724 cgccccgcaaccgctttttttaattttctttattaaatttt 43366684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 54480279 - 54480319
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  54480279 cgcccctcacccgctttttaaagtttactttattaaatttt 54480319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 175 - 335
Target Start/End: Complemental strand, 6073859 - 6073697
Alignment:
Q  175 tagacatggcaacaaaacctgccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgaggg 274  Q
    ||||||||| ||||||| | |||||||||||||||||||||| ||||||| |||||| ||||| ||| |||||||||||| ||||||||||||||| ||     
T  6073859 tagacatggtaacaaaatccgccccgccccgaatttaacggg-aaaagccgatttaattgggtacggatgtgggggaaatctggatttttagtacggggt 6073761  T
Q  275 cgaggg---tggatgcttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    || |||    ||||||||| || ||||||||||||| ||||| |||||||||||||||||||||    
T  6073760 cgtgggctcgggatgcttatacccgccccgcacccgttttttaaaatttactttattaaatttt 6073697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 18431849 - 18431985
Alignment:
Q  195 gccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacact 294  Q
    ||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||    || ||||||||||||     
T  18431849 gccccgccccgaatttaacagagaaaagccgatttaactgggtgcgggtgtggaggaaatttagatttttagtacggggg---tgggggatgcttacacc 18431945  T
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
     || ||||||| || |||| ||||||||||| |||||||||    
T  18431946 ggctccgcacctgc-ttttgaaatttacttttttaaatttt 18431985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 10608864 - 10608799
Alignment:
Q  202 cccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagt 267  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||||||||||||| | ||||||||    
T  10608864 cccgaatttaacgaggaaaagccgatttaattgagtgcgggtgtgggggaaattttggtttttagt 10608799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 5801758 - 5801854
Alignment:
Q  175 tagacatggcaacaaaacctgcccc-gccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||||||| |||| | ||||| | | ||||||||||||||||||||| ||||||| |  ||||||| ||||||||||||  |||| |||||||    
T  5801758 tagacatggcaataaaatccgcccccgtctcgaatttaacggggaaaagccgatttaaccgaatgcgggtatgggggaaatttaaatttgtagtacg 5801854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 40112161 - 40112228
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttt 263  Q
    ||||||||| ||||||| ||||||||| | ||||||||||| |||||||||| |||||| || |||||    
T  40112161 ccccgccccaaatttaatggggaaaagtcgatttaactgggggcgggtgtggaggaaatctgaatttt 40112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 284260 - 284223
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  284260 cccgcacccgctttttgaaatttactttattaaatttt 284223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 631617 - 631654
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  631617 cccgcacccgctttttgaaatttactttattaaatttt 631654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 817429 - 817466
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  817429 cccgcacccgctttttgaaatttactttattaaatttt 817466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 8386794 - 8386831
Alignment:
Q  233 tgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8386794 tgggtgcgagtgtgggggaaatttggatttttagtacg 8386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 10608755 - 10608718
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10608755 cccgcacccgctttttaaaatttactttattaaatttt 10608718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 40112274 - 40112313
Alignment:
Q  296 gccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  40112274 gccccgcatccgctttttgaaatttactttattaaatttt 40112313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 29204802 - 29204894
Alignment:
Q  176 agacatggcaacaaaacctgccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagta 268  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  29204802 agacatgacaacaaaacccaccccgccccgaatttaacggggaaaagccgatttaattgggtgtgggtgtgggggaaatttggatttttagta 29204894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 29172822 - 29172693
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactc 295  Q
    ||||||||||||||||||||||||||| |||||||||      ||||||||||||||||||  |||||||||||| ||||| |||    ||||||||| |    
T  29172822 ccccgccccgaatttaacggggaaaagtcaatttaac------cgggtgtgggggaaatttaaatttttagtacgggggcgggggg---tgcttacaccc 29172732  T
Q  296 gccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||| ||||||||||||| ||||||||||||||| |||||    
T  29172731 gccc-gcacccgctttttgaaatttactttattatatttt 29172693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 6342339 - 6342248
Alignment:
Q  178 acatggcaacaaaacctgcccc-gccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagta 268  Q
    |||||||||||||| ||||||| ||||  ||||||| ||||||||||| |||||||||||||||| || |||| |||||| |||||||||||    
T  6342339 acatggcaacaaaaactgcccccgccctaaatttaatggggaaaagccgatttaactgggtgcggatgcggggaaaattttgatttttagta 6342248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 933081 - 933213
Alignment:
Q  197 cccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcg 296  Q
    |||||||||||||||||  | ||||||  |||||||||| | ||| ||| ||| |||||||||||||||||||||||     || |||||||||||| ||    
T  933081 cccgccccgaatttaacatg-aaaagctgatttaactggatacggatgtaggg-aaatttggatttttagtacgaggt----gggggatgcttacacccg 933174  T
Q  297 ccccgcacccgcttttttaaatttactttattaaatttt 335  Q
      |||||||||||||||  ||||||||||||||||||||    
T  933175 ttccgcacccgctttttggaatttactttattaaatttt 933213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 47981013 - 47981086
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtac 269  Q
    ||||||||  ||||||||| | |||| |||||||||||||||||||||||||||||||| ||  ||||||||||    
T  47981013 ccccgccctaaatttaacgtgaaaaaaccaatttaactgggtgcgggtgtgggggaaatatgagtttttagtac 47981086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 52112667 - 52112622
Alignment:
Q  282 ggatgcttacactcgccccgcacccgcttttttaaatttactttat 327  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  52112667 ggatgcttacacccgccccgcacccgctttttgaaatttactttat 52112622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 1748377 - 1748487
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaac----tg--ggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgctt 289  Q
    |||||||| |||||||||||||||| ||| |||||||    ||  |||||||||||||||||||||   |||||||||||| |||  |||  ||||||||    
T  1748377 ccccgccctgaatttaacggggaaaggccgatttaaccaggtgcaggtgcgggtgtgggggaaattgaaatttttagtacggggggcagg--ggatgctt 1748474  T
Q  290 acactcgccccgc 302  Q
    |||| ||||||||    
T  1748475 acacccgccccgc 1748487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 47335896 - 47335843
Alignment:
Q  282 ggatgcttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||| |||||| |||||| ||||| |||||||||||||||| ||||    
T  47335896 ggatgcttacacccgccccacacccgttttttaaaatttactttattaagtttt 47335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 15965144 - 15965104
Alignment:
Q  204 cgaatttaacggggaaaagccaatttaactgggtgcgggtg 244  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  15965144 cgaatttaacggggtaaagccgatttaactgggtgcgggtg 15965104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 6857750 - 6857614
Alignment:
Q  201 ccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagg---gtggatgcttacactcgc 297  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||||| |||| |||| |||||||||| ||| | ||   | |||||||||||| |||    
T  6857750 ccccaaatttaacggggaaaagtcgatttaactgggtgcgggtgtgggg-aaatctggaattttagtacgggggtggggccgggggatgcttacacccgc 6857652  T
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  6857651 cccgcacccgctttttaaaatttactttattatatttt 6857614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 2367533 - 2367605
Alignment:
Q  197 cccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtac 269  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  2367533 cccgccccgaatttaacgggaaaaagccgatttaattgggtgcgggtgtgggggaaatttggatttttagtac 2367605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 335
Target Start/End: Original strand, 33021051 - 33021198
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgag---------ggtggatg 286  Q
    |||||||||||||||||  ||||||| || |||||| |||||||||||||||||| ||||| || |||||||||| ||||| |         || |||||    
T  33021051 ccccgccccgaatttaagagggaaaaaccgatttaattgggtgcgggtgtggggg-aatttagagttttagtacgggggcggggtcggatgcgggggatg 33021149  T
Q  287 cttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||  ||||||||||||||||||| |||||| ||||||||||||||    
T  33021150 cttacatccgccccgcacccgctttttaaaattttctttattaaatttt 33021198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 29608806 - 29608871
Alignment:
Q  205 gaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||||| | ||||| | |||||| ||||||| |||| |||||||||||||||||||||||||    
T  29608806 gaatttaacgcgaaaaagtcgatttaattgggtgcaggtgcgggggaaatttggatttttagtacg 29608871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 2367648 - 2367685
Alignment:
Q  298 cccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2367648 cccgcacccgctttttgaaatttactttattaaatttt 2367685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 9865639 - 9865570
Alignment:
Q  204 cgaatttaacggggaaaagccaatttaact------gggtgcgggtgtgggggaaatttggatttttagt 267  Q
    ||||||||||||| ||||| | ||||||||      ||||||||||||||||||||||||| ||||||||    
T  9865639 cgaatttaacgggaaaaagtcgatttaactaggtgagggtgcgggtgtgggggaaatttgggtttttagt 9865570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 18343574 - 18343464
Alignment:
Q  234 gggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggt---------ggatgcttacactcgccccgcacccgcttttttaaatttactt 324  Q
    |||| ||||||||||||||||||||| |||||||||  ||||| |||          |||||||||| | ||||||||||||||||||| ||| || |||    
T  18343574 gggtacgggtgtgggggaaatttggagttttagtacaggggcgggggcaggtgtgggggatgcttacccccgccccgcacccgctttttaaaactttctt 18343475  T
Q  325 tattaaatttt 335  Q
    | |||||||||    
T  18343474 tcttaaatttt 18343464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 19692259 - 19692307
Alignment:
Q  15 aacataatggagcggagtggaatggagtgaaatggaacaaagattccat 63  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||    
T  19692259 aacataatggaatgaagtggaatggactgaaatggaacaaatattccat 19692307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 29608921 - 29608961
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  29608921 cgcctcgcacccgttttttgaaatttactttattaaatttt 29608961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 43032811 - 43032675
Alignment:
Q  203 ccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcga----gggtggatgcttacactcgcc 298  Q
    ||||||||||  |||||||| | ||||||  |||||||||||||||||||||||   |||||||||||||||||     ||| ||||||||| ||| |||    
T  43032811 ccgaatttaatagggaaaagtcgatttaatcgggtgcgggtgtgggggaaattttagtttttagtacgagggcggaggcggggggatgcttatactagcc 43032712  T
Q  299 ccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43032711 ccgcacccgctttttgaaatttactttattaaatttt 43032675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 7342693 - 7342831
Alignment:
Q  200 gccccgaatttaacggggaaaagccaatttaactgggtgcgggtg------tgggggaaatttggatttttagtacgagggcgagggtggatgcttacac 293  Q
    ||||| ||||||| | ||||||||| ||||||| |||||||||||      |||||||||| | ||||||||||||| ||||| |||   ||||||||||    
T  7342693 gccccaaatttaatgaggaaaagccgatttaaccgggtgcgggtgcaggtgtgggggaaatcttgatttttagtacgggggcggggg---atgcttacac 7342789  T
Q  294 tcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
     | |||| |||||||||||| |||||||||||||||||||||    
T  7342790 ccaccccacacccgctttttgaaatttactttattaaatttt 7342831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 4987836 - 4987962
Alignment:
Q  206 aatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcacc 305  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| |||||||| | |||| |||||  |  ||||   ||||||||| || || | | ||||    
T  4987836 aatttaacggggaaaaaccaatttaactaggtgcaggtgtggaggaaatttcggttttgagtacaggaccgag---ggatgcttatacccgtctcacacc 4987932  T
Q  306 cgcttttttaaatttactttattaaatttt 335  Q
    ||| |||| |||||||||||||||||||||    
T  4987933 cgcattttgaaatttactttattaaatttt 4987962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 335
Target Start/End: Original strand, 3943583 - 3943736
Alignment:
Q  174 ttagacatggcaacaaaacctgccc--cgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacga 271  Q
    |||||||||| | ||||| ||||||  || ||||||||||||||||||| ||  | |||| ||||||||||      |||||| |||||||||||||||     
T  3943583 ttagacatggtaccaaaatctgcccgccgtcccgaatttaacggggaaatgctgaattaattgggtgcggg------ggaaatctggatttttagtacgg 3943676  T
Q  272 gggcgagggtggatgcttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||| ||    ||||||| || ||||||||||||| ||||| ||||||||| ||| |||||||    
T  3943677 gggcgggg----atgcttaaacccgccccgcacccgttttttaaaatttactgtataaaatttt 3943736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 3713776 - 3713823
Alignment:
Q  197 cccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtg 244  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  3713776 cccgccccgtatttaacggggaaaagccaatttaattgggtgtgggtg 3713823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 13768900 - 13768954
Alignment:
Q  195 gccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggg 249  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||    
T  13768900 gccccgccccgtatttaacggggaaaaaccgatttaactgggtgcgagtgcgggg 13768954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 3846409 - 3846485
Alignment:
Q  226 atttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcacc 305  Q
    ||||||||||||||||||||||||||||| ||  ||||||||| | ||||| ||||   ||||||||| |||||| ||||    
T  3846409 atttaactgggtgcgggtgtgggggaaatatgagtttttagtatgggggcgggggt---tgcttacacccgccccacacc 3846485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 11253688 - 11253642
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcggg 242  Q
    ||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  11253688 ccccgccccgattttaacggggaaaagccgaattaactgggtccggg 11253642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 3846496 - 3846532
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaa 331  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  3846496 cgccccgcacccgttttttgaaatttactttattaaa 3846532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 32113220 - 32113300
Alignment:
Q  174 ttagacatggcaaca-aaacctgccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaa 253  Q
    ||||||||||||||| || |||  || |||| || |||||||| |||||||| | |||||||||| |||||| ||||||||    
T  32113220 ttagacatggcaacacaaccctcacctgccctgattttaacggagaaaagccgaattaactgggttcgggtgcgggggaaa 32113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 37648343 - 37648417
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  37648343 ccccgccccgaatttaacggagaaaagccgatttaactgggtgcgggtgtgggggaaatatggatttttagtacg 37648417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 335
Target Start/End: Original strand, 21833181 - 21833314
Alignment:
Q  201 ccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttgga-tttttagtacgagggcgagggtggatgcttacactcgccc 299  Q
    |||||||| ||||| | ||||||| ||||||||  |||||||||||||| ||||||||| ||||||||||  ||| ||||| |||| |||| || |||||    
T  21833181 ccccgaatataacgagaaaaagccgatttaactaagtgcgggtgtggggaaaatttggattttttagtac--gggggaggggggatacttatacccgccc 21833278  T
Q  300 cgcacccgcttttttaaatttactttattaaatttt 335  Q
     ||||||| ||||| ||||||| |||||||||||||    
T  21833279 ggcacccgttttttaaaatttaatttattaaatttt 21833314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 8454468 - 8454604
Alignment:
Q  203 ccgaatttaacggggaaaagccaatttaactgggtgcgggtgtg-ggggaaatttggatttttagtacgagggcgagg---gtggatgcttacactcgcc 298  Q
    ||||||||||||||||||| |  ||||||| |||||||||| || |||||||| || |||||||||| | |||||| |   | |||||||| ||| | ||    
T  8454468 ccgaatttaacggggaaaaactgatttaaccgggtgcgggtatgtggggaaatctgaatttttagtatgggggcgaagtcgggggatgcttgcacccacc 8454567  T
Q  299 ccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  8454568 ccgcacccgttttttgaaatttactttattaaatttt 8454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 45265788 - 45265719
Alignment:
Q  15 aacataatggagcggagtggaatggagtgaaatggaacaaagattccatccaactgtttaaatattatat 84  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||||||| |||||||| |||||||||    
T  45265788 aacataatagagcggagtggtatggaccgaaatggaacaaagattccatcccactgtttagatattatat 45265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 24500576 - 24500506
Alignment:
Q  200 gccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||||||||||| | |||||| | ||||||||||||||||||||||||||||| ||  |||||||||||    
T  24500576 gccccgaatttaacagagaaaagtcgatttaactgggtgcgggtgtgggggaaatctgagtttttagtacg 24500506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 37648461 - 37648501
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  37648461 cgccccgcacccgctttttaaaatttactttattaaatttt 37648501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 25415790 - 25415690
Alignment:
Q  233 tgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcacccgcttttttaaatttactttattaaat 332  Q
    ||||||| |||||||||||||||| | |||||||||| |||| | ||| ||||||||| |  |||| | ||||||| |||| || |||| ||||||||||    
T  25415790 tgggtgcaggtgtgggggaaatttaggtttttagtac-agggggtggg-ggatgcttatatccgcctcacacccgccttttaaattttattttattaaat 25415693  T
Q  333 ttt 335  Q
    |||    
T  25415692 ttt 25415690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 319276 - 319236
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||| ||||||||||||| ||||||||||||||| |||||    
T  319276 cgccctgcacccgctttttaaaatttactttattacatttt 319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 8072123 - 8072083
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||| |||||||||||||  |||||||||||||||||||||    
T  8072123 cgcctcgcacccgcttttggaaatttactttattaaatttt 8072083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 8072239 - 8072191
Alignment:
Q  200 gccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtggg 248  Q
    |||||||||||| |||||| ||||| |||||||| | ||||||||||||    
T  8072239 gccccgaatttatcggggacaagccgatttaactagatgcgggtgtggg 8072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 24500472 - 24500432
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||||||||| ||||||| |||||| ||||||    
T  24500472 cgccccgcacccgctttttgaaatttagtttatttaatttt 24500432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 28710356 - 28710433
Alignment:
Q  192 cctgccccgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtac 269  Q
    ||||||||| ||||||||||||||||||||||| |||||||  |||||||||||||||||||||| | ||||||||||    
T  28710356 cctgccccgtcccgaatttaacggggaaaagccgatttaacaaggtgcgggtgtgggggaaatttaggtttttagtac 28710433  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 11569736 - 11569659
Alignment:
Q  202 cccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagtacgagggcgagg 279  Q
    ||||||||||||||||||||| |||||||| | |||||||||||   |||||| || ||||||||||| |||||||||    
T  11569736 cccgaatttaacggggaaaagacaatttaattaggtgcgggtgtcatggaaatctgaatttttagtacaagggcgagg 11569659  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 51241291 - 51241247
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  51241291 ccccgccccgaatttaacggggaaaagcctatttaactgggtgcg 51241247  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 51241157 - 51241122
Alignment:
Q  300 cgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||||||| |||||||||||||||||||||    
T  51241157 cgcacccgctttttgaaatttactttattaaatttt 51241122  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 37802267 - 37802320
Alignment:
Q  282 ggatgcttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||| | ||||||||||||||||||| ||| || |||| |||||||||    
T  37802267 ggatgcttacccccgccccgcacccgctttttaaaactttcttttttaaatttt 37802320  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 11735475 - 11735385
Alignment:
Q  242 gtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||| | ||||||||||||| ||||| |||   |||||||||| ||| || |||||||||||| ||||||||||||||| |||||    
T  11735475 gtgtgggggaaatcttgatttttagtacgggggcggggg---atgcttacacccgctccacacccgctttttgaaatttactttattatatttt 11735385  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 15438012 - 15437943
Alignment:
Q  234 gggtgcgggtgtgggggaaatttggatttttagtacgagggcgagggtggatgcttacactcgccccgcaccc 306  Q
    ||||||||||||||||||||| || |||||||||||| |||| |||  |||||||||||| ||||||||||||    
T  15438012 gggtgcgggtgtgggggaaatctgaatttttagtacgggggc-agg--ggatgcttacacccgccccgcaccc 15437943  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 21581792 - 21581832
Alignment:
Q  295 cgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  21581792 cgccccgcacccgctttttaaaatttactttattaaatttt 21581832  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 31023032 - 31023074
Alignment:
Q  207 atttaacggggaaaagccaatttaactgggtgcgggtgtgggg 249  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  31023032 atttaacggggaaaagccaatttgattgggtgcgggtgtgggg 31023074  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 27856571 - 27856430
Alignment:
Q  196 ccccgccccgaatttaacggggaaaagccaatttaactgggtgcg------ggtgtgggggaaatttggatttttagtacgagggcgagggtggatgctt 289  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||        |||||||||||| || |||||||||||  || |   || ||||||||    
T  27856571 ccccgccctgaatttaacggggaaaagataatttaactaggtgcgaatgcaactgtgggggaaatctgaatttttagtacacggtc---gggggatgctt 27856475  T
Q  290 acactcgccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    || | ||||| | ||| ||||||| |||||||||||||||||||||    
T  27856474 ac-cccgccctggacctgctttttgaaatttactttattaaatttt 27856430  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 18275433 - 18275472
Alignment:
Q  296 gccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  18275433 gccccgcacctgctttttgaaatttactttattaaatttt 18275472  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 32240413 - 32240374
Alignment:
Q  296 gccccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  32240413 gccccacacccgctttttgaaatttactttattaaatttt 32240374  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 35824365 - 35824331
Alignment:
Q  301 gcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||||||| |||||||||||||||||||||    
T  35824365 gcacccgctttttgaaatttactttattaaatttt 35824331  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 15437933 - 15437897
Alignment:
Q  299 ccgcacccgcttttttaaatttactttattaaatttt 335  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  15437933 ccgcacccgatttttgaaatttactttattaaatttt 15437897  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 18275322 - 18275386
Alignment:
Q  204 cgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttttagta 268  Q
    |||| |||||||||||||||  |||||||||||||| |||||| || |||| | | |||||||||    
T  18275322 cgaacttaacggggaaaagcttatttaactgggtgcaggtgtgaggaaaatctaggtttttagta 18275386  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 21581718 - 21581754
Alignment:
Q  234 gggtgcgggtgtgggggaaatttggatttttagtacg 270  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21581718 gggtgcaggtgtgggggaaatctggatttttagtacg 21581754  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 32240534 - 32240471
Alignment:
Q  199 cgccccgaatttaacggggaaaagccaatttaactgggtgcgggtgtgggggaaatttggatttt 263  Q
    |||||||||||||||||| ||| | | |||||||||||| |||||||||| ||||| || |||||    
T  32240534 cgccccgaatttaacggg-aaacgtcgatttaactgggttcgggtgtgggagaaatctgaatttt 32240471  T

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Target: scaffold0472 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 12484 - 12527
Alignment:
Q  233 tgggtgcgggtgtgggggaaatttggatttttagtacgagggcg 276  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  12484 tgggtgcgggtgtgggggaaatctggatttttagtacgggggcg 12527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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