View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21404_low_4 (Length: 339)

Name: NF21404_low_4
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21404_low_4
NF21404_low_4
[»] chr7 (16 HSPs)
chr7 (1-330)||(30106879-30107207)
chr7 (58-138)||(3178311-3178393)
chr7 (62-140)||(34100658-34100736)
chr7 (58-136)||(37245634-37245712)
chr7 (58-136)||(25571364-25571441)
chr7 (58-136)||(36790682-36790762)
chr7 (58-136)||(759198-759276)
chr7 (58-136)||(34947444-34947522)
chr7 (58-136)||(42935602-42935680)
chr7 (44-106)||(17610631-17610693)
chr7 (44-94)||(40614737-40614787)
chr7 (58-136)||(21350732-21350811)
chr7 (60-136)||(7457530-7457605)
chr7 (60-100)||(16904359-16904399)
chr7 (45-85)||(30546449-30546489)
chr7 (45-136)||(32346146-32346237)
[»] chr2 (13 HSPs)
chr2 (58-140)||(5272237-5272318)
chr2 (56-101)||(38187979-38188024)
chr2 (58-136)||(5789746-5789823)
chr2 (58-136)||(36354541-36354618)
chr2 (58-136)||(17695265-17695345)
chr2 (58-136)||(9458364-9458441)
chr2 (45-138)||(43410361-43410454)
chr2 (58-136)||(16463624-16463704)
chr2 (58-136)||(35313824-35313902)
chr2 (3-73)||(1206734-1206804)
chr2 (58-136)||(37322366-37322443)
chr2 (45-122)||(16028267-16028343)
chr2 (58-136)||(45235516-45235596)
[»] scaffold0159 (1 HSPs)
scaffold0159 (58-136)||(34119-34196)
[»] chr8 (10 HSPs)
chr8 (58-136)||(13335154-13335231)
chr8 (58-138)||(14855035-14855117)
chr8 (53-136)||(40109650-40109732)
chr8 (1-48)||(17719290-17719337)
chr8 (58-135)||(17719359-17719436)
chr8 (58-141)||(36006988-36007073)
chr8 (90-140)||(396742-396794)
chr8 (58-134)||(1875840-1875916)
chr8 (1-46)||(7703188-7703233)
chr8 (100-140)||(10180090-10180130)
[»] chr5 (8 HSPs)
chr5 (58-136)||(6753966-6754044)
chr5 (58-136)||(6315875-6315953)
chr5 (58-136)||(19929883-19929961)
chr5 (58-136)||(41496017-41496095)
chr5 (1-48)||(6753687-6753734)
chr5 (2-48)||(21060667-21060713)
chr5 (58-111)||(41478745-41478800)
chr5 (58-111)||(41480111-41480166)
[»] chr4 (10 HSPs)
chr4 (58-136)||(35311329-35311409)
chr4 (1-140)||(46396920-46397059)
chr4 (58-140)||(43237174-43237258)
chr4 (60-136)||(34360592-34360668)
chr4 (45-136)||(42616996-42617087)
chr4 (60-141)||(49176042-49176124)
chr4 (58-138)||(16821437-16821518)
chr4 (58-136)||(38405208-38405287)
chr4 (58-136)||(49746897-49746976)
chr4 (87-136)||(52859930-52859978)
[»] chr1 (12 HSPs)
chr1 (58-136)||(24991756-24991835)
chr1 (61-136)||(12039019-12039094)
chr1 (58-136)||(4659714-4659791)
chr1 (58-138)||(11449822-11449900)
chr1 (58-136)||(6785193-6785271)
chr1 (58-101)||(35682897-35682940)
chr1 (58-136)||(39864048-39864126)
chr1 (89-136)||(49224121-49224167)
chr1 (60-138)||(27721468-27721545)
chr1 (44-136)||(7759152-7759244)
chr1 (52-136)||(33733359-33733443)
chr1 (45-136)||(37506061-37506152)
[»] chr3 (12 HSPs)
chr3 (58-136)||(10366749-10366827)
chr3 (45-135)||(39043844-39043932)
chr3 (1-50)||(37772995-37773044)
chr3 (58-101)||(8679154-8679197)
chr3 (58-136)||(19822948-19823026)
chr3 (1-48)||(24569131-24569178)
chr3 (1-48)||(30190691-30190738)
chr3 (58-101)||(31158611-31158654)
chr3 (58-136)||(36460516-36460594)
chr3 (58-141)||(38795276-38795359)
chr3 (2-48)||(34957540-34957586)
chr3 (58-136)||(43253963-43254042)
[»] chr6 (10 HSPs)
chr6 (55-141)||(12307691-12307776)
chr6 (58-140)||(15058051-15058132)
chr6 (58-136)||(7920178-7920254)
chr6 (2-48)||(30716937-30716983)
chr6 (62-141)||(34299926-34300006)
chr6 (58-136)||(29363241-29363321)
chr6 (2-43)||(32440676-32440717)
chr6 (57-136)||(24983547-24983624)
chr6 (57-134)||(27367523-27367602)
chr6 (57-134)||(27457870-27457949)
[»] scaffold1809 (1 HSPs)
scaffold1809 (58-136)||(784-861)
[»] scaffold0330 (1 HSPs)
scaffold0330 (58-136)||(5329-5405)
[»] scaffold0110 (1 HSPs)
scaffold0110 (2-50)||(1739-1787)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 30107207 - 30106879
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30107207 aatggtaaaattaatattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataa 30107108  T
Q  101 aatgttgcattagtatcctaaggtgacaattattttaagaccgatnnnnnnnntgcagaagtgactattattatgaaacagagcggagtaattactaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  30107107 aatgttgcattagtatcctaaggtgacaattattttaagacggataaaaaaa-tgcagaagtgactattattatgaaacagagcggagtaattactaaca 30107009  T
Q  201 attgtttatccaatttttgttttaaacaagctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattcctatgctgaaaat 300  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30107008 attgtttgtccaatttttgatttaaacaagctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattcctatgctgaaaat 30106909  T
Q  301 caagcacaaaacataatgaatcaagtataa 330  Q
    ||||||||||||||||||||||||||||||    
T  30106908 caagcacaaaacataatgaatcaagtataa 30106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 3178311 - 3178393
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaa-ataataaa-atgttgcattagtatcctaaggtgacaattattttaa 138  Q
    ||||||||||||||||| ||||||| | ||| |||| |||||||| ||||||||||||||| |||| || |||||||||||||    
T  3178311 tgaaattcaataaataagggtatattaatgggaaaacataataaatatgttgcattagtattctaaagtaacaattattttaa 3178393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 34100658 - 34100736
Alignment:
Q  62 attcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    ||||||||||||| ||||||  |||| ||||| |||||||| ||||||||||||||  ||| ||||||||||||||||||    
T  34100658 attcaataaataagggtataatagtgaaaaaacataataaa-tgttgcattagtattgtaaagtgacaattattttaaga 34100736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 37245712 - 37245634
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtg-gaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  |||| |||||||||||||| ||||||||| ||||  ||| ||||||||||||||    
T  37245712 tgaaattcaataaataagggtataatagtgagaaaaaataataaa-tgttgcattggtattgtaaagtgacaattatttt 37245634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 25571441 - 25571364
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | |  ||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  25571441 tgaaattcaataaataagggtataataattaaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 25571364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 36790762 - 36790682
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||||||||||||||  ||||| ||||||  ||| |||| ||||||||||||||    
T  36790762 tgaaattcaataaataagggtataataatggaaaaaataataataaatgctgcattgctattctaaagtgacaattatttt 36790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 759198 - 759276
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtgg-aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||| |||||||||| ||||| |||||| |||| |||| ||||||||||||||    
T  759198 tgaaattcaataaataagggtataataatggaaaaaaataat-aaatgctgcattggtattctaaagtgacaattatttt 759276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 34947522 - 34947444
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||| | ||||||  | ||||||||| ||||||| ||||||||| |||| |||| ||||||||||||||    
T  34947522 tgaaattcaataaatgagggtataataatggaaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 34947444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 42935680 - 42935602
Alignment:
Q  58 tgaaattcaataaataatggtat-atgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||| ||||||||||||  |||| || | |||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  42935680 tgaagttcaataaataagagtattataattggaaaaaataataaa-tgttgcatttgtattctaaagtgacaattatttt 42935602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 17610631 - 17610693
Alignment:
Q  44 atagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgtt 106  Q
    ||||| || |||||||||||||||||||||  | ||||| ||||||||||||||  |||||||    
T  17610631 atagttaattagagtgaaattcaataaatagggatatattagtggaaaaaataaataaatgtt 17610693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 40614737 - 40614787
Alignment:
Q  44 atagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa 94  Q
    ||||||||| ||||||||||||||| ||| | ||||||||||||| |||||    
T  40614737 atagtcaagaagagtgaaattcaatgaatgaaggtatatgagtgggaaaaa 40614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 21350732 - 21350811
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  |||||  |||||||||| ||||| |||||| ||||  ||| ||||||||||||||    
T  21350732 tgaaattcaataaataagggtataatagtggaaaaaaaataat-aaatgctgcattggtattgtaaagtgacaattatttt 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 7457530 - 7457605
Alignment:
Q  60 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||||||||||||  |||||  ||||||||||||||| ||||||||||||  |||  ||| |||| |||||||||    
T  7457530 aaattcaataaataagagtataatagtggaaaaaataat-aaatgttgcattgatattgtaaagtgataattatttt 7457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 16904399 - 16904359
Alignment:
Q  60 aaattcaataaataatggtatatgagtggaaaaaataataa 100  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  16904399 aaattcaataaataagggtataatagtggaaaaaataataa 16904359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 30546449 - 30546489
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgag 85  Q
    |||| |||| |||||||||||||||||||| ||||||||||    
T  30546449 tagttaagtggagtgaaattcaataaataagggtatatgag 30546489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 32346146 - 32346237
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||| |||| || ||||||||||||||||| ||||||  | |||||||| ||||| ||||| ||||||||||| ||||  ||| |||||||||    
T  32346146 tagttaagttgaatgaaattcaataaataagggtataataatggaaaaagataat-aaatgctgcattagtattctaaaatgataattatttt 32346237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 5272237 - 5272318
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    ||||||||||||||||| ||||||  | ||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||    
T  5272237 tgaaattcaataaataagggtataataatgggaaaaataataaa-tgttgcatttgtattctaaagtgacaattattttaaga 5272318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 38187979 - 38188024
Alignment:
Q  56 agtgaaattcaataaataatggtatatgagtggaaaaaataataaa 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  38187979 agtgaaattcaataaataatggtatatgagtggaaaaattaataaa 38188024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 5789746 - 5789823
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||  |||  ||| ||||||||||||||    
T  5789746 tgaaattcaataaataatggtataatagtggaaaaaataat-aaatgatgcattgatattgtaaagtgacaattatttt 5789823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 36354541 - 36354618
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||  |||||| |||| |||| ||||||||||||||    
T  36354541 tgaaattcaataaataatggtataataatggaaaaaataat-aaattctgcattggtattctaaagtgacaattatttt 36354618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 17695345 - 17695265
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  ||||||||||||||||  ||||| ||||||  ||| |||| ||||||||||||||    
T  17695345 tgaaattcaataaataagggtataatagtggaaaaaataataataaatgctgcattgatattctaaagtgacaattatttt 17695265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 9458364 - 9458441
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||| ||||||||| ||||||  | ||||||||||||| ||||| |||||| |||| |||| ||||||||||||||    
T  9458364 tgaaatttaataaataagggtataataatggaaaaaataat-aaatgctgcattggtattctaaagtgacaattatttt 9458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 43410454 - 43410361
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattattttaa 138  Q
    |||| |||| || ||||||||||||||| |  |||||  | ||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||    
T  43410454 tagttaagttgaatgaaattcaataaatgagagtataataatggaaaaaaataataaa-tgttgcattagtattctaaagtgacaattattttaa 43410361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 16463704 - 16463624
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||| |||||||||||||| |  | ||||||||||||||  ||||| |||||| |||| |||| ||||||||||||||    
T  16463704 tgaaatttaataaataatggtaaaataatggaaaaaataataataaatgctgcattggtattctaaagtgacaattatttt 16463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 35313902 - 35313824
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||||||||||||||  |||||  ||||||||||| ||||||| |||||||||| |||  ||| ||||||||||||||    
T  35313902 tgaaattcaataaataagagtataatagtggaaaaaagtaataaa-tgttgcattattattgtaaagtgacaattatttt 35313824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 1206734 - 1206804
Alignment:
Q  3 tggtaaaattagtattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaata 73  Q
    ||||||||||||||  ||||||| ||||| |||||| |||| |||| |||| |  ||||||||||||||||    
T  1206734 tggtaaaattagtaacatttactaaaatatccttattaattgtagttaagttggatgaaattcaataaata 1206804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 37322443 - 37322366
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||||||||||||| ||||| | |||  |||| |||| ||||||||||||||    
T  37322443 tgaaattcaataaataagggtataataatggaaaaaataat-aaatgctacataggtattctaaagtgacaattatttt 37322366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 16028343 - 16028267
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaag 122  Q
    |||| |||| ||||||||||||||||||||  |||||  |||| ||||||| || ||||||||||||| ||| |||||    
T  16028343 tagttaagtggagtgaaattcaataaataaatgtataatagtgaaaaaaattat-aaatgttgcattaatattctaag 16028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 45235596 - 45235516
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| | ||||  | || ||||||||||||  ||||||||||| ||||  ||| ||||||||||||||    
T  45235596 tgaaattcaataaataaggatatagtaatgaaaaaaataataataaatgttgcattggtattataaagtgacaattatttt 45235516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 34119 - 34196
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||  |||  ||| ||||||||||||||    
T  34119 tgaaattcaataaataatggtataatagtggaaaaaataat-aaatgatgcattgatattgtaaagtgacaattatttt 34196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 13335231 - 13335154
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||| | ||||||  | |||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  13335231 tgaaattcaataaatcagggtataataatggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 13335154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 14855035 - 14855117
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattattttaa 138  Q
    |||||||||||||| |||||||||  ||||||||||| ||||  |||| |||||||| |||  ||| ||||||||||||||||    
T  14855035 tgaaattcaataaagaatggtataatagtggaaaaaaaaataataaatattgcattaatattgtaaagtgacaattattttaa 14855117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 40109732 - 40109650
Alignment:
Q  53 tagagtgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||||||||   ||||| |||||||||| ||||| ||||||||||||| ||| ||||  |||||||||||||    
T  40109732 tagagtgaaattcaataaataagaatatattagtggaaaaatataat-aaatgttgcatta-tattctaaaatgacaattatttt 40109650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17719290 - 17719337
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    ||||||||| ||||||||||||||| ||||| |||||| |||||||||    
T  17719290 aatggtaaagttagtattatttactaaaatatccttattaattatagt 17719337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 17719359 - 17719436
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaa-ataataaaatgttgcattagtatcctaaggtgacaattattt 135  Q
    ||||||| ||||||||| ||||||  | |||||||| |||||||| ||||||||| |||| |||| |||||||||||||    
T  17719359 tgaaatttaataaataaaggtataataatggaaaaagataataaa-tgttgcattggtattctaaagtgacaattattt 17719436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 36006988 - 36007073
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaa--tgttgcattagtatcctaaggtgacaattattttaagac 141  Q
    |||||||||||||||||  | |||  |||| ||||||||| || |  |||||||||||||| |||| |||||||||||||| ||||    
T  36006988 tgaaattcaataaataagagcataatagtgaaaaaaataaaaataattgttgcattagtattctaaagtgacaattattttgagac 36007073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 396742 - 396794
Alignment:
Q  90 aaaaataataa--aatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    |||||||||||  ||||||||||| |||| |||| ||||||||||||||||||    
T  396742 aaaaataataataaatgttgcattggtattctaaagtgacaattattttaaga 396794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 1875840 - 1875916
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatt 134  Q
    ||||||| ||||||||| ||||||  ||||||||||| |||| |||||||||||| ||||  ||| ||||||||||||    
T  1875840 tgaaatttaataaataagggtatactagtggaaaaaagtaat-aaatgttgcattggtattgtaaagtgacaattatt 1875916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7703188 - 7703233
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattata 46  Q
    ||||||||||||| ||| ||||||| |||||||||||| |||||||    
T  7703188 aatggtaaaattaatatcatttactaaaatacccttattaattata 7703233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 10180090 - 10180130
Alignment:
Q  100 aaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    |||||||||||| |||| |||| ||||||||||||||||||    
T  10180090 aaatgttgcattggtattctaaagtgacaattattttaaga 10180130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 6754044 - 6753966
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| |||||||   ||||||||| || ||||||||||||| ||||  ||| ||||||||||||||    
T  6754044 tgaaattcaataaataagggtatattgatggaaaaaaaaaaaaaatgttgcattggtattataaagtgacaattatttt 6753966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 6315875 - 6315953
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  6315875 tgaaattcaataaataagggtataataatggaaaataataataaa-tgttgcattggtattctaaagtgacaattatttt 6315953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 19929961 - 19929883
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  19929961 tgaaattcaataaataagggtataataatggaaaataataataaa-tgttgcattggtattctaaagtgacaattatttt 19929883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 41496095 - 41496017
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||| |||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||  ||| ||||||||||||||    
T  41496095 tgaaatgcaataaataaaggtataatagtggaaaagaataataaa-tgttgcattagtattgtaaagtgacaattatttt 41496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6753687 - 6753734
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  6753687 aatggtaaaattagtatcatttactaaaatacccttattaattgtagt 6753734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 21060713 - 21060667
Alignment:
Q  2 atggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    |||||||||||||||||||||||| |||||| ||||| |||| ||||    
T  21060713 atggtaaaattagtattatttactaaaatactcttattaattgtagt 21060667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 41478800 - 41478745
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcatt 111  Q
    ||||||||||||||||| ||||||  ||| ||||||||||||  ||||||||||||    
T  41478800 tgaaattcaataaataaaggtataatagtagaaaaaataataataaatgttgcatt 41478745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 41480166 - 41480111
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcatt 111  Q
    ||||||||||||||||| ||||||  |||| |||||||||||  ||||||||||||    
T  41480166 tgaaattcaataaataaaggtataatagtgaaaaaaataataataaatgttgcatt 41480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 35311329 - 35311409
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||||||||||||||  |||||||||||| ||||  ||| ||||||||||||||    
T  35311329 tgaaattcaataaataaaggtataatattggaaaaaataataataaatgttgcattggtattgtaaagtgacaattatttt 35311409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 46396920 - 46397059
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taata 99  Q
    ||||||||||||| ||  ||||||| ||| || ||||| |||| |||| |||| |  | ||||||| ||||||| ||||||  | ||||||||| ||||     
T  46396920 aatggtaaaattaatagcatttactaaaacactcttattaattgtagttaagttggataaaattcattaaataagggtataataatggaaaaaactaat- 46397018  T
Q  100 aaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    |||||||| ||| ||||| ||| ||||||||||||||||||    
T  46397019 aaatgttgtattcgtatcgtaaagtgacaattattttaaga 46397059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 43237258 - 43237174
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    |||||||||||||||||  |||||  |||| |||||||||||  |||||||||||||||| | ||| |||||| | |||||||||    
T  43237258 tgaaattcaataaataagtgtataatagtgaaaaaaataataataaatgttgcattagtaccgtaaagtgacactcattttaaga 43237174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 34360668 - 34360592
Alignment:
Q  60 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||| ||||||  ||||||||||| || ||||||||  ||| ||||  ||| ||||||||||||||    
T  34360668 aaattcaataaataagggtataatagtggaaaaaaaaaaaaaatgttaaattggtattgtaaagtgacaattatttt 34360592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 42616996 - 42617087
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||| |||| || |||||||||||||||||  |||||  | ||||||| ||||||||| ||||||||| |||| |||| ||||||||||||||    
T  42616996 tagttaagtcgaatgaaattcaataaataagtgtataataatggaaaataataataaa-tgttgcatttgtattctaaagtgacaattatttt 42617087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 49176042 - 49176124
Alignment:
Q  60 aaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 141  Q
    ||||||||||||||| ||||||  |||||  ||||||||||||  ||||||||| |||| |||| |||||||||||||| ||||    
T  49176042 aaattcaataaataagggtataatagtgggaaaaaaataataat-tgttgcattggtattctaaagtgacaattattttgagac 49176124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 16821437 - 16821518
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattattttaa 138  Q
    ||||||||||||||||| ||||||  |||| ||||| ||||||  |||| |||||| |||| |||| ||||||||||||||||    
T  16821437 tgaaattcaataaataagggtataatagtgcaaaaa-taataataaatgctgcattggtattctaaagtgacaattattttaa 16821518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 38405208 - 38405287
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa--taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | |||||||||  |||| ||||||||||||  ||| |||| ||||||||||||||    
T  38405208 tgaaattcaataaataaaggtataataatggaaaaaaagtaat-aaatgttgcattgctattctaaagtgacaattatttt 38405287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 49746976 - 49746897
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataa--aatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | |||||||| ||||||  ||||||||||| ||||  ||| ||||||||||||||    
T  49746976 tgaaattcaataaataagggtataataatggaaaaa-taataataaatgttgcattggtattgtaaagtgacaattatttt 49746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 52859930 - 52859978
Alignment:
Q  87 ggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  52859930 ggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 52859978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 24991756 - 24991835
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtgg--aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  |||||  ||||||||||||| ||||||||||||||  ||| ||||||||||||||    
T  24991756 tgaaattcaataaataaaggtataatagtgggaaaaaaataataaa-tgttgcattagtattgtaaagtgacaattatttt 24991835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 12039094 - 12039019
Alignment:
Q  61 aattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||||||||||| ||||||  ||||||||| ||||||||| ||||||||||||||  ||| ||||||||||||||    
T  12039094 aattcaataaataagggtataatagtggaaaataataataaa-tgttgcattagtattgtaaagtgacaattatttt 12039019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 4659791 - 4659714
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| | ||||  |||||||||||||| | ||||||||||| ||||  ||| ||||||||||||||    
T  4659791 tgaaattcaataaataaggatataatagtggaaaaaataa-ataatgttgcattggtattgtaaagtgacaattatttt 4659714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 11449900 - 11449822
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaa 138  Q
    ||||||||||||||||| ||||||  | |||||| || || |||||||||||||||||| |||| ||||||| ||||||||    
T  11449900 tgaaattcaataaataa-ggtataataatggaaagaaaaa-aaaatgttgcattagtattctaaagtgacaactattttaa 11449822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 6785271 - 6785193
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  ||||||||||| ||||||| ||||||||  ||||  ||| ||||||||||||||    
T  6785271 tgaaattcaataaataagggtataatagtggaaaaaaataataaa-tgttgcataggtattgtaaagtgacaattatttt 6785193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 35682897 - 35682940
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 101  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||    
T  35682897 tgaaattcaataaataagggtataatagtggaaaaaataataaa 35682940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 39864126 - 39864048
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  ||||||||||| ||||||| |||||||||  |||  ||| ||||||||||||||    
T  39864126 tgaaattcaataaataagggtataatagtggaaaaaaataataaa-tgttgcattgatattgtaaagtgacaattatttt 39864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 49224121 - 49224167
Alignment:
Q  89 aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  49224121 aaaaaataataaa-tgttgcattagtattctaaagtgacaattatttt 49224167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 27721545 - 27721468
Alignment:
Q  60 aaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaa 138  Q
    |||||||||||||||  |||||  ||||||||||||||| ||||| |||||| ||||  ||| ||| ||||||||||||    
T  27721545 aaattcaataaataaaagtataatagtggaaaaaataat-aaatgatgcatttgtattgtaaagtggcaattattttaa 27721468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 7759244 - 7759152
Alignment:
Q  44 atagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||| |||| || ||||||||||||||||| ||||||  | ||||||||| ||||||| || ||||||| |||  ||| ||||||||||||||    
T  7759244 atagttaagttgaatgaaattcaataaataagggtataataatggaaaaaaataataaa-tgatgcattattattgtaaagtgacaattatttt 7759152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 33733359 - 33733443
Alignment:
Q  52 gtagagtgaaattcaataaataatggtatatgagtggaaaa-aataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||| ||||||||||||||||| ||||||  | ||||||| |||||| ||||| | |||| |||| |||| ||||||||||||||    
T  33733359 gtagaatgaaattcaataaataagggtataataatggaaaagaataat-aaatgcttcattggtattctaaagtgacaattatttt 33733443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 37506152 - 37506061
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaa-taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||| |||| || ||||||||||||||||| |||||   | ||||||||| ||||||| |||||||||  ||| |||| ||||||||||||||    
T  37506152 tagttaagttgaatgaaattcaataaataagggtattataatggaaaaaaataataaa-tgttgcattgatattctaaagtgacaattatttt 37506061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 10366749 - 10366827
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtgg-aaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  | ||| ||||||||||||| ||||||||| |||| |||| ||||||||||||||    
T  10366749 tgaaattcaataaataagggtataataatgggaaaaaataataaa-tgttgcattggtattctaaagtgacaattatttt 10366827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 39043844 - 39043932
Alignment:
Q  45 tagtcaagtagagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattt 135  Q
    |||| |||| || ||||||||||||||||| ||||||  | || ||||||||||||| ||||||||| |||| |||| |||||||||||||    
T  39043844 tagttaagttgaatgaaattcaataaataagggtataataatg-aaaaaataataaa-tgttgcattggtattctaaagtgacaattattt 39043932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37772995 - 37773044
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagtca 50  Q
    ||||||||||||| ||| ||||||| |||||||||||| |||||||||||    
T  37772995 aatggtaaaattaatatcatttactaaaatacccttattaattatagtca 37773044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 8679154 - 8679197
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 101  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||    
T  8679154 tgaaattcaataaataagggtataatagtggaaaaaataataaa 8679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 19823026 - 19822948
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcct-aaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||| | || |||||||||| ||||| |||||| |||| || || ||||||||||||||    
T  19823026 tgaaattcaataaataagggtatattaatgaaaaaaataat-aaatgctgcattggtattctaaaagtgacaattatttt 19822948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24569131 - 24569178
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    ||||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  24569131 aatggtaaaattaatattatttactaaaatacccttattaattgtagt 24569178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30190691 - 30190738
Alignment:
Q  1 aatggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  30190691 aatggtaaaattagtatcatttactaaaatacccttattaattgtagt 30190738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 31158611 - 31158654
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaa 101  Q
    ||||||||||||||||||||||||  |||| |||||||||||||    
T  31158611 tgaaattcaataaataatggtataatagtgaaaaaaataataaa 31158654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 36460516 - 36460594
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaa-aaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  |||||||| ||||||| |||| |||||||  |||| ||| ||||||||||||||    
T  36460516 tgaaattcaataaataagggtataatagtggaaacaaataat-aaatattgcattgatatcgtaaagtgacaattatttt 36460594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 38795359 - 38795276
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 141  Q
    ||||||| |||||| || || |||  ||||||||| | |||||||| ||||||| |||| |||| |||||||||||||| ||||    
T  38795359 tgaaatttaataaaaaagggcataatagtggaaaataaaataaaatattgcattggtattctaaagtgacaattattttgagac 38795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 34957586 - 34957540
Alignment:
Q  2 atggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    ||||||||||| |||| ||||||||||||| |||||| |||||||||    
T  34957586 atggtaaaatttgtataatttacttaaatatccttattaattatagt 34957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 43253963 - 43254042
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaa--taataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||| ||||||| ||||||  |||||||||||  |||| |||||||||||| ||||  ||| ||||||||||||||    
T  43253963 tgaaattcattaaataagggtataatagtggaaaaaaactaat-aaatgttgcattggtattgtaaagtgacaattatttt 43254042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 12307691 - 12307776
Alignment:
Q  55 gagtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 141  Q
    ||||||||||||||||||||   ||||| ||| ||||||||||| |||||||| |||| |||  ||| |||||||||||||| ||||    
T  12307691 gagtgaaattcaataaataagaatatattagttgaaaaaataat-aaatgttgtattaatattttaaagtgacaattattttgagac 12307776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 15058132 - 15058051
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattattttaaga 140  Q
    ||||||||||||||||| ||||||  |||  |||||||||| |||||||||||  ||||  ||| ||||||||||||||||||    
T  15058132 tgaaattcaataaataagggtataatagtacaaaaaataat-aaatgttgcatcggtattataaagtgacaattattttaaga 15058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 7920254 - 7920178
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||||||||||  ||||  ||||||||  ||||||||||||  ||| |||| |||| |||||||||    
T  7920254 tgaaattcaataaataatggtataatagtg--aaaaataaataaatgttgcattgatattctaaagtgataattatttt 7920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 30716983 - 30716937
Alignment:
Q  2 atggtaaaattagtattatttacttaaatacccttatgaattatagt 48  Q
    |||||||||||||||| ||||||||||| |||||||| |||| ||||    
T  30716983 atggtaaaattagtatcatttacttaaacacccttattaattgtagt 30716937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 34300006 - 34299926
Alignment:
Q  62 attcaataaataatggtatatgagtggaaa--aaataataaaatgttgcattagtatcctaaggtgacaattattttaagac 141  Q
    ||||||||||||| | ||||| ||||||||  |||||||||| ||||| |||  ||| |||| |||||||||||||||||||    
T  34300006 attcaataaataaggatatattagtggaaagaaaataataaa-tgttgtattgatattctaaagtgacaattattttaagac 34299926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 29363321 - 29363241
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||||||||||||||  |||||  | ||||||||||||||  ||||| |||||| |||| || | ||||||||||||||    
T  29363321 tgaaattcaataaataagagtataataatggaaaaaataataataaatgctgcattggtattctgaagtgacaattatttt 29363241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 32440676 - 32440717
Alignment:
Q  2 atggtaaaattagtattatttacttaaatacccttatgaatt 43  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  32440676 atggtaaaattagtattatttactaaaacacccttattaatt 32440717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 24983547 - 24983624
Alignment:
Q  57 gtgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    |||||||||||||||||| ||||||| |||||| |||| |||  ||||| || || |||  |||| ||||||||||||||    
T  24983547 gtgaaattcaataaataagggtatattagtggataaaaaaat--aatgtggcgttggtaatctaaagtgacaattatttt 24983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 27367523 - 27367602
Alignment:
Q  57 gtgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatt 134  Q
    |||||||||||||||||| ||||||  ||||||||||| | ||  ||||||| |||| ||||  ||| ||||||||||||    
T  27367523 gtgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattatt 27367602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 27457870 - 27457949
Alignment:
Q  57 gtgaaattcaataaataatggtatatgagtggaaaaaataata--aaatgttgcattagtatcctaaggtgacaattatt 134  Q
    |||||||||||||||||| ||||||  ||||||||||| | ||  ||||||| |||| ||||  ||| ||||||||||||    
T  27457870 gtgaaattcaataaataagggtataatagtggaaaaaaaactaataaatgttacattggtattgtaaagtgacaattatt 27457949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 784 - 861
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||  |||||||||||| ||  ||||||||| | ||||  ||| ||||||||||||||    
T  784 tgaaattcaataaataagggtataatagtggaaaaaat-attcaatgttgcaatggtattgtaaagtgacaattatttt 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 5405 - 5329
Alignment:
Q  58 tgaaattcaataaataatggtatatgagtggaaaaaataataaaatgttgcattagtatcctaaggtgacaattatttt 136  Q
    ||||||||||||||||| ||||||| | ||||||||||||| |||||||| ||| | || |||| || |||||||||||    
T  5405 tgaaattcaataaataaaggtatat-aatggaaaaaataat-aaatgttgtattggcattctaaagtaacaattatttt 5329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 1787 - 1739
Alignment:
Q  2 atggtaaaattagtattatttacttaaatacccttatgaattatagtca 50  Q
    |||||||||||||||| ||||||||||| |||| ||| |||| ||||||    
T  1787 atggtaaaattagtatcatttacttaaacacccgtattaattgtagtca 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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