View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21404_low_9 (Length: 238)

Name: NF21404_low_9
Description: NF21404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21404_low_9
NF21404_low_9
[»] chr8 (17 HSPs)
chr8 (21-169)||(30883191-30883339)
chr8 (23-238)||(3048612-3048824)
chr8 (21-238)||(2952314-2952523)
chr8 (21-238)||(5860837-5861046)
chr8 (21-79)||(13534779-13534837)
chr8 (21-79)||(13624319-13624377)
chr8 (21-79)||(41879133-41879191)
chr8 (188-238)||(41878180-41878230)
chr8 (21-79)||(45475769-45475827)
chr8 (21-80)||(23606722-23606781)
chr8 (21-80)||(23798354-23798413)
chr8 (188-238)||(20003877-20003927)
chr8 (188-236)||(30883127-30883175)
chr8 (21-79)||(10917343-10917401)
chr8 (21-79)||(42600734-42600792)
chr8 (188-238)||(37430302-37430352)
chr8 (188-238)||(45472206-45472256)
[»] chr6 (26 HSPs)
chr6 (21-169)||(21479359-21479507)
chr6 (21-169)||(21280410-21280558)
chr6 (21-165)||(13727492-13727636)
chr6 (21-169)||(33773982-33774130)
chr6 (21-79)||(19737785-19737843)
chr6 (188-238)||(23070890-23070940)
chr6 (21-69)||(28075748-28075796)
chr6 (195-238)||(19741231-19741274)
chr6 (195-238)||(21280348-21280391)
chr6 (188-238)||(12083641-12083691)
chr6 (188-238)||(13727650-13727700)
chr6 (21-79)||(17353909-17353967)
chr6 (188-238)||(21479299-21479349)
chr6 (196-238)||(27314773-27314815)
chr6 (188-237)||(30832668-30832717)
chr6 (21-80)||(27788781-27788840)
chr6 (188-238)||(24711143-24711193)
chr6 (196-238)||(27579084-27579126)
chr6 (21-80)||(235319-235377)
chr6 (24-79)||(19987116-19987171)
chr6 (188-238)||(1156018-1156068)
chr6 (21-51)||(24711092-24711122)
chr6 (21-51)||(30832617-30832647)
chr6 (188-238)||(33773915-33773964)
chr6 (21-79)||(34397812-34397870)
chr6 (114-150)||(15645927-15645963)
[»] chr2 (23 HSPs)
chr2 (21-169)||(4505755-4505903)
chr2 (21-238)||(3155018-3155226)
chr2 (21-238)||(6964807-6965016)
chr2 (21-169)||(8907172-8907320)
chr2 (21-123)||(12337541-12337643)
chr2 (188-238)||(12337690-12337740)
chr2 (21-80)||(9045979-9046038)
chr2 (188-238)||(3952914-3952964)
chr2 (21-79)||(29939955-29940013)
chr2 (188-238)||(4505694-4505744)
chr2 (188-238)||(7162692-7162742)
chr2 (25-79)||(8327617-8327671)
chr2 (21-79)||(10762658-10762716)
chr2 (188-238)||(34693162-34693212)
chr2 (188-238)||(34715574-34715624)
chr2 (195-238)||(40635977-40636020)
chr2 (21-79)||(27506833-27506891)
chr2 (190-238)||(3399524-3399572)
chr2 (21-68)||(24410398-24410446)
chr2 (21-69)||(26716089-26716137)
chr2 (21-51)||(3952985-3953015)
chr2 (17-51)||(7162763-7162797)
chr2 (188-238)||(41213929-41213979)
[»] chr3 (32 HSPs)
chr3 (21-238)||(54619296-54619504)
chr3 (21-238)||(27078662-27078869)
chr3 (21-238)||(27084459-27084666)
chr3 (22-238)||(36716119-36716326)
chr3 (21-167)||(38681186-38681332)
chr3 (21-107)||(29620481-29620567)
chr3 (21-79)||(3953989-3954047)
chr3 (21-79)||(18372434-18372492)
chr3 (17-79)||(34290725-34290787)
chr3 (188-237)||(47467597-47467646)
chr3 (21-80)||(43207330-43207389)
chr3 (188-238)||(38681348-38681398)
chr3 (188-237)||(36605862-36605911)
chr3 (195-238)||(3954860-3954903)
chr3 (188-234)||(13795206-13795252)
chr3 (21-79)||(44708432-44708490)
chr3 (188-238)||(50258735-50258785)
chr3 (21-79)||(53506977-53507035)
chr3 (27-79)||(54407256-54407308)
chr3 (21-80)||(50939326-50939385)
chr3 (188-238)||(21582683-21582733)
chr3 (188-238)||(42098713-42098763)
chr3 (188-238)||(53149458-53149508)
chr3 (24-80)||(9878783-9878839)
chr3 (195-238)||(1148362-1148405)
chr3 (190-237)||(18372048-18372095)
chr3 (21-79)||(8073431-8073488)
chr3 (21-51)||(21582754-21582784)
chr3 (21-79)||(37168322-37168380)
chr3 (21-51)||(47467667-47467697)
chr3 (21-51)||(53149407-53149437)
chr3 (206-238)||(29620618-29620650)
[»] chr1 (30 HSPs)
chr1 (21-238)||(44655554-44655762)
chr1 (21-123)||(27906809-27906911)
chr1 (25-109)||(34246981-34247065)
chr1 (21-79)||(5316643-5316701)
chr1 (21-79)||(50881393-50881451)
chr1 (21-79)||(4971710-4971768)
chr1 (17-79)||(19955680-19955742)
chr1 (21-79)||(23185390-23185448)
chr1 (21-79)||(9181097-9181155)
chr1 (188-238)||(14146220-14146270)
chr1 (188-238)||(27906949-27906999)
chr1 (21-79)||(44895615-44895673)
chr1 (21-80)||(9173115-9173174)
chr1 (195-238)||(41697287-41697330)
chr1 (188-238)||(3406338-3406388)
chr1 (188-238)||(3440432-3440482)
chr1 (21-63)||(5027528-5027570)
chr1 (188-238)||(6771711-6771761)
chr1 (188-238)||(6888484-6888534)
chr1 (23-80)||(1366972-1367029)
chr1 (195-238)||(16139975-16140018)
chr1 (188-238)||(5027975-5028025)
chr1 (21-79)||(13913574-13913632)
chr1 (21-79)||(17168919-17168977)
chr1 (21-79)||(27559600-27559658)
chr1 (21-51)||(3406409-3406439)
chr1 (21-51)||(3440381-3440411)
chr1 (188-238)||(10912095-10912145)
chr1 (21-79)||(40501882-40501940)
chr1 (21-51)||(41697229-41697259)
[»] chr4 (42 HSPs)
chr4 (21-237)||(38209683-38209891)
chr4 (21-123)||(55255182-55255284)
chr4 (21-79)||(10978857-10978915)
chr4 (21-79)||(23509890-23509948)
chr4 (21-79)||(34768666-34768724)
chr4 (21-79)||(47128944-47129002)
chr4 (24-79)||(13460164-13460219)
chr4 (21-79)||(10428297-10428355)
chr4 (188-238)||(17679232-17679282)
chr4 (21-75)||(48209201-48209255)
chr4 (188-238)||(1105446-1105496)
chr4 (188-238)||(10431443-10431493)
chr4 (188-238)||(13459799-13459849)
chr4 (21-79)||(19498461-19498519)
chr4 (21-79)||(24969394-24969452)
chr4 (21-79)||(34027536-34027594)
chr4 (21-79)||(40089473-40089531)
chr4 (188-238)||(55255095-55255145)
chr4 (21-80)||(16844977-16845036)
chr4 (196-238)||(5128992-5129034)
chr4 (21-79)||(38352347-38352405)
chr4 (188-238)||(45560705-45560755)
chr4 (188-238)||(47127996-47128046)
chr4 (188-238)||(48208465-48208515)
chr4 (21-79)||(54083334-54083392)
chr4 (27-80)||(32128540-32128593)
chr4 (195-234)||(9579477-9579516)
chr4 (195-234)||(9585172-9585211)
chr4 (20-79)||(16882486-16882545)
chr4 (23-75)||(9578733-9578782)
chr4 (21-79)||(35779417-35779475)
chr4 (188-238)||(37514573-37514623)
chr4 (111-156)||(30083360-30083405)
chr4 (188-237)||(34769534-34769583)
chr4 (21-80)||(2790833-2790892)
chr4 (199-238)||(32915312-32915351)
chr4 (21-80)||(43455623-43455682)
chr4 (188-238)||(27596640-27596690)
chr4 (21-51)||(32915370-32915400)
chr4 (21-79)||(35465064-35465122)
chr4 (21-79)||(37777315-37777373)
chr4 (34-78)||(2135447-2135491)
[»] chr5 (24 HSPs)
chr5 (21-238)||(34756456-34756665)
chr5 (17-79)||(16592160-16592222)
chr5 (21-79)||(30854282-30854339)
chr5 (21-79)||(27078963-27079021)
chr5 (188-238)||(15480230-15480280)
chr5 (21-79)||(16198884-16198942)
chr5 (188-238)||(19523108-19523158)
chr5 (21-80)||(9364242-9364301)
chr5 (21-80)||(16799417-16799476)
chr5 (21-80)||(28822432-28822491)
chr5 (195-238)||(31881598-31881641)
chr5 (21-80)||(38869453-38869512)
chr5 (20-79)||(40389625-40389684)
chr5 (188-238)||(36188020-36188070)
chr5 (190-238)||(22987470-22987518)
chr5 (195-238)||(30853281-30853324)
chr5 (21-79)||(7670876-7670934)
chr5 (195-238)||(2274813-2274856)
chr5 (21-80)||(27924033-27924092)
chr5 (21-51)||(15480179-15480209)
chr5 (188-238)||(16592846-16592896)
chr5 (21-51)||(19523179-19523209)
chr5 (44-78)||(22986660-22986694)
chr5 (23-51)||(2274870-2274898)
[»] chr7 (20 HSPs)
chr7 (21-169)||(18776858-18777006)
chr7 (25-109)||(40357454-40357538)
chr7 (21-79)||(8171631-8171689)
chr7 (21-79)||(29077172-29077230)
chr7 (21-80)||(38414968-38415027)
chr7 (21-79)||(24525777-24525835)
chr7 (21-79)||(25010385-25010443)
chr7 (188-238)||(28749596-28749646)
chr7 (21-78)||(23551163-23551220)
chr7 (195-238)||(12596437-12596480)
chr7 (188-235)||(18777019-18777066)
chr7 (21-80)||(47985062-47985121)
chr7 (21-79)||(20091373-20091431)
chr7 (21-80)||(19692045-19692104)
chr7 (188-238)||(10955393-10955443)
chr7 (21-79)||(48983936-48983994)
chr7 (17-79)||(8239637-8239701)
chr7 (21-69)||(10329502-10329550)
chr7 (21-51)||(10955464-10955494)
chr7 (21-51)||(12596379-12596409)
[»] scaffold0070 (2 HSPs)
scaffold0070 (21-79)||(1295-1353)
scaffold0070 (195-238)||(1026-1069)
[»] scaffold0039 (1 HSPs)
scaffold0039 (21-80)||(106489-106548)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 30883339 - 30883191
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30883339 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 30883240  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30883239 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 30883191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 3048612 - 3048824
Alignment:
Q  23 gaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggccta 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3048612 gaggaaccctcacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggccta 3048711  T
Q  123 agagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||||    
T  3048712 agagatattaagggggcctaaaaagaaaccaccattatactggatat---aaaataaataaaaaatgaggcccatccttgagggaggcccagctcgtttg 3048808  T
Q  223 agctgtttgcaccccc 238  Q
    ||||||||||||||||    
T  3048809 agctgtttgcaccccc 3048824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 2952314 - 2952523
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatctta-gggggc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2952314 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttaggggggc 2952413  T
Q  120 ctaagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| ||||||||    
T  2952414 ctaagagatattaagggggcctaaaaagaaaccaccattatactggatat---------aaaaaaaaatgaggcccatccttgagggaggcccagctcgt 2952504  T
Q  220 ttgagctgtttgcaccccc 238  Q
    |||||||||||||||||||    
T  2952505 ttgagctgtttgcaccccc 2952523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 5860837 - 5861046
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |    
T  5860837 atgagaaaccccaacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttaggggatc 5860936  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  5860937 taagagatattaagggggcctaaaaagaaaccaccattatactggatat--------aaaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 5861028  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  5861029 tgagctgtttgcaccccc 5861046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 13534779 - 13534837
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13534779 atgaggaacccccacctaacaccaaaatcaagagaaactaattctaataatcctaaaag 13534837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 13624319 - 13624377
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13624319 atgaggaacccccacctaacaccaaaatcaagagaaactaattctaataatcctaaaag 13624377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 41879191 - 41879133
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41879191 atgagaaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 41879133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 41878230 - 41878180
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41878230 tgaggctcatccttgagggaggctcaactcgtttgagctgtttgcaccccc 41878180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 45475827 - 45475769
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  45475827 atgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaag 45475769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 23606722 - 23606781
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  23606722 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 23606781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 23798354 - 23798413
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  23798354 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 23798413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 20003877 - 20003927
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  20003877 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 20003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 30883175 - 30883127
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccc 236  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 10917401 - 10917343
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  10917401 atgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 10917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 42600792 - 42600734
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  42600792 atgaggaacccccacctaacaccaaaagcaagaagacctaattctaataggcctaaaag 42600734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 37430302 - 37430352
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| ||| |||| || ||||||||||||||||||||||||    
T  37430302 tgaggcccatccttaaggaaggcccaactcgtttgagctgtttgcaccccc 37430352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 45472256 - 45472206
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||| ||| ||||||| |||||||||||||||||||    
T  45472256 tgaggcccatccttgggggtggcccagctcggttgagctgtttgcaccccc 45472206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 21479507 - 21479359
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21479507 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 21479408  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21479407 taagagatattaagggggcctaaaaagaatccaccattatactggatat 21479359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 21280558 - 21280410
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  21280558 atgaggaactcccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggtc 21280459  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280458 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 21280410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 13727492 - 13727636
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  13727492 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggctcatccttttgagggaatgaaataatcttagggggcc 13727591  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactgg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13727592 taagagatattaagggggcctaaaaagaaaccaccattatactgg 13727636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 33774130 - 33773982
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  33774130 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagagacccatccttgtgagggaatgaaataatcttagggggcc 33774031  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  33774030 taagagatattaaagggacctaaaaagaaaccaccattatactggatat 33773982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 19737785 - 19737843
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19737785 atgaggaacccccacctaacaccaaaatcaagaggaactaattttaataatcctaaaag 19737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 23070890 - 23070940
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  23070890 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 23070940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 28075796 - 28075748
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaata 69  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  28075796 atgaggaacccccacctaacaccaaaaacaagaggacctaattctaata 28075748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 19741231 - 19741274
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  19741231 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 19741274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 21280391 - 21280348
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  21280391 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 21280348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 12083641 - 12083691
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  12083641 tgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccc 12083691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 13727650 - 13727700
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccc 13727700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 17353967 - 17353909
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  17353967 atgatgaacccccacctaacaccaaaagcaagaggacctaattctaatagacctaaaag 17353909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 21479349 - 21479299
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  21479349 tgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccc 21479299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27314773 - 27314815
Alignment:
Q  196 atccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  27314773 atccttgagggaggcccagctcgtttgagctgtttgcaccccc 27314815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 30832668 - 30832717
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcacccc 237  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  30832668 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 30832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 27788781 - 27788840
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| ||||| || |||||| |||||  |||||||||    
T  27788781 atgaggaacccccacctaacaccaaaagcaagatgacctaattttaataggcctaaaaga 27788840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 24711143 - 24711193
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||||||| ||||| |||||||||||||||||||||    
T  24711143 tgaggcccatccttgggggaggcccagcttgtttgagctgtttgcaccccc 24711193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27579084 - 27579126
Alignment:
Q  196 atccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  27579084 atccttgagggaggcccagctcgtttgagctggttgcaccccc 27579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 235319 - 235377
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||| |||||||||| |||||||||| |||||||| ||||||||||||  |||||||||    
T  235319 atgagaaacccccacc-aacaccaaaagcaagaggacctaattctaataggcctaaaaga 235377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 19987171 - 19987116
Alignment:
Q  24 aggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||| |||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  19987171 aggaatccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 19987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 1156018 - 1156068
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| |||||| |  ||||||||||||||||||||||||||    
T  1156018 tgaggcccatccttaagggagacctagctcgtttgagctgtttgcaccccc 1156068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 24711092 - 24711122
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  24711092 atgaggaacccccacctaacaccaaaatcaa 24711122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 30832617 - 30832647
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  30832617 atgaggaacccccacctaacaccaaaatcaa 30832647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 33773964 - 33773915
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||| |||||| |||||||||||||    
T  33773964 tgaggcccatccttgagggaggcccagctcatttgag-tgtttgcaccccc 33773915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 34397870 - 34397812
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||| |||| ||||||||||| ||||| || ||||||||||||  ||||||||    
T  34397870 atgaggaacctccacttaacaccaaaagcaagaagacctaattctaataggcctaaaag 34397812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 15645927 - 15645963
Alignment:
Q  114 gggggcctaagagatattaagggggcctaaaaagaaa 150  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  15645927 gggggcctaaaagatattgagggggcctaaaaagaaa 15645963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 4505903 - 4505755
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  4505903 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggtc 4505804  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4505803 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 4505755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 3155226 - 3155018
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||    
T  3155226 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggtccatccttgtgagggaatgaaataatcttaggggacc 3155127  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  3155126 taagagatattaagggggcctaaaaagaaaccaccattatactggatat---------aaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 3155036  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  3155035 tgagctgtttgcaccccc 3155018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 6965016 - 6964807
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||    
T  6965016 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataattctaaaagaggcccatccttgtgagggaatgaaataatcttagggagcc 6964917  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  6964916 taagagatattaagggggcctaaaaagaaaccaccattatactggatat--------aaaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 6964825  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  6964824 tgagctgtttgcaccccc 6964807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 8907172 - 8907320
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8907172 atgagaaacccccacctaacaccaaaatcaagaggaattaattctaataatcctaaaagaagcccatccttgtgagggaatgaaataatcttagggggcc 8907271  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  8907272 taagagatattaaggaggcctaaaaagaaaccaccattatactagatat 8907320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 12337541 - 12337643
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12337541 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 12337640  T
Q  121 taa 123  Q
    |||    
T  12337641 taa 12337643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 12337690 - 12337740
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12337690 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccc 12337740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 9046038 - 9045979
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||    
T  9046038 atgaggaacccccacctaacacaaaaagcaagaggacctaattctaataagcctaaaaga 9045979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 3952964 - 3952914
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3952964 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 3952914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 29939955 - 29940013
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||||    
T  29939955 atgaggaaccaccacctaacaccaaaagcaagaggaactaattctaatagacctaaaag 29940013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 4505744 - 4505694
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccc 4505694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 7162742 - 7162692
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  7162742 tgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccc 7162692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 8327671 - 8327617
Alignment:
Q  25 ggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  8327671 ggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 8327617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10762658 - 10762716
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||  ||||||||    
T  10762658 atgaggaacccccacctaacaccaaatgcaagaggacctaattctaataggcctaaaag 10762716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 34693212 - 34693162
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  34693212 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccc 34693162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 34715624 - 34715574
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  34715624 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccc 34715574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 40636020 - 40635977
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  40636020 catccttgagggaggcccaactcgtttgagctgtttgcaccccc 40635977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 27506833 - 27506891
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||| ||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  27506833 atgaggaactcccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 27506891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 3399572 - 3399524
Alignment:
Q  190 aggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||| |||||||||||||||  || ||||||||||||||||||||||||    
T  3399572 aggcccatccttgagggaggtccaactcgtttgagctgtttgcaccccc 3399524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 24410446 - 24410398
Alignment:
Q  21 atgaggaaccccc-acctaacaccaaaatcaagaggaactaattctaat 68  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  24410446 atgaggaaccccccacctaacaccaaaaacaagaggacctaattctaat 24410398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 26716137 - 26716089
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaata 69  Q
    |||||||||||||||||||||| |||| |||||| | ||||||||||||    
T  26716137 atgaggaacccccacctaacacaaaaagcaagagaacctaattctaata 26716089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 3953015 - 3952985
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  3953015 atgaggaacccccacctaacaccaaaatcaa 3952985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 7162797 - 7162763
Alignment:
Q  17 atatatgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||| ||||||||||||||||||    
T  7162797 atatatgaggaacccctacctaacaccaaaatcaa 7162763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 41213929 - 41213979
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||| ||||||| | |||||||||| ||||||||||||||||    
T  41213929 tgaggcccatcctcgagggagacccagctcgtttaagctgtttgcaccccc 41213979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 54619296 - 54619504
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  54619296 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagagacccatccttgtgagggaatgaaataatcttagggggcc 54619395  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  54619396 taagagatattaagggggcctaaaaataaaccaccattatactggatat---------aaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 54619486  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  54619487 tgagctgtttgcaccccc 54619504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 27078662 - 27078869
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27078662 atgagaaacccctacctaacaccaaaatcaagatgaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 27078761  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  27078762 taagagatattaagggggcctaaaaagaaaccaccattatactggatat----------aaaaaaaatgaggcccatccttgagggaggcccagctcgtt 27078851  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  27078852 tgagctgtttgcaccccc 27078869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 27084459 - 27084666
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27084459 atgagaaacccctacctaacaccaaaatcaagatgaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 27084558  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  27084559 taagagatattaagggggcctaaaaagaaaccaccattatactggatat----------aaaaaaaatgaggcccatccttgagggaggcccagctcgtt 27084648  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  27084649 tgagctgtttgcaccccc 27084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 36716119 - 36716326
Alignment:
Q  22 tgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcct 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||    
T  36716119 tgagggacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggagtct 36716218  T
Q  122 aagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| ||||||||||    
T  36716219 aagagatattaagggggcctaaaaagaaaccaccattatactggatat---------aaaaaaaaatgaggcccatccttgagggaggcccagctcgttt 36716309  T
Q  222 gagctgtttgcaccccc 238  Q
    |||||||||||||||||    
T  36716310 gagctgtttgcaccccc 36716326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 38681186 - 38681332
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  38681186 atgaggaaaccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagagaccaatccttgtgagggaatgaaataatcttagggggcc 38681285  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggat 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38681286 taagagatattaagggggcctaaaaagaaaccaccattatactggat 38681332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 29620481 - 29620567
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaata 107  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  29620481 atgaggaacccccacctaacaccacaatcaagaggaactaattttaataatcctaaaagaggcacatccttgtgagggaatgaaata 29620567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 3953989 - 3954047
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3953989 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 3954047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 18372492 - 18372434
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18372492 atgaggaatccccatctaacaccaaaatcaagaggaactaattctaataatcctaaaag 18372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 34290725 - 34290787
Alignment:
Q  17 atatatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  34290725 atatatgaggaacccccacctaacaccaaaaacaagaggacctaattctaataggcctaaaag 34290787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 47467646 - 47467597
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcacccc 237  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47467646 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccc 47467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 43207330 - 43207389
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  43207330 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 43207389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 38681348 - 38681398
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 38681398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcacccc 237  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 3954860 - 3954903
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  3954860 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 3954903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 13795252 - 13795206
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcac 234  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||    
T  13795252 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcac 13795206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 44708490 - 44708432
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  44708490 atgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 44708432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 50258735 - 50258785
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  50258735 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccc 50258785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 53506977 - 53507035
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  53506977 atgagaaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 53507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 54407256 - 54407308
Alignment:
Q  27 aacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  54407256 aacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 54407308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 50939326 - 50939385
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||||||  |||||||||    
T  50939326 atgaggaacccccgcctaacaccaaaagcaaaaggacctaattctaataggcctaaaaga 50939385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 21582733 - 21582683
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| ||||| || |||||||||||||||||||||||||||    
T  21582733 tgaggcccatccttaagggatgcccagctcgtttgagctgtttgcaccccc 21582683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 42098763 - 42098713
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||||||| || ||||||||||||||||||||||||    
T  42098763 tgaggcccatccttgtgggaggcccaactcgtttgagctgtttgcaccccc 42098713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 53149458 - 53149508
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||  |||||| |||||||||||||||||||||||||||    
T  53149458 tgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccc 53149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 9878783 - 9878839
Alignment:
Q  24 aggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||||||  |||||||||    
T  9878783 aggaacccccatctaacgccaaaagcaagaggacctaattctaataggcctaaaaga 9878839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 1148362 - 1148405
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||    
T  1148362 catccttgggggaggcccagctcgtttgagctgttcgcaccccc 1148405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 18372095 - 18372048
Alignment:
Q  190 aggctcatccttgagggaggctcagctcgtttgagctgtttgcacccc 237  Q
    |||| |||||||||||||| | |||||||||||| |||||||||||||    
T  18372095 aggcccatccttgagggagccccagctcgtttgaactgtttgcacccc 18372048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 8073431 - 8073488
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||| || ||||||||||| ||| |||||||||||||||||  ||||||||    
T  8073431 atgaggaacccc-acataacaccaaaagcaataggaactaattctaataggcctaaaag 8073488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 21582784 - 21582754
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  21582784 atgaggaacccccacctaacaccaaaatcaa 21582754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 37168380 - 37168322
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||| |||||||||||| |||| |||||||| |||||| |||||  ||||||||    
T  37168380 atgaggaactcccacctaacactaaaagcaagaggacctaattataataggcctaaaag 37168322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 47467697 - 47467667
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  47467697 atgaggaacccccacctaacaccaaaatcaa 47467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 53149407 - 53149437
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  53149407 atgaggaacccccacctaacaccaaaatcaa 53149437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 29620618 - 29620650
Alignment:
Q  206 gaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||| |||||||||||||||||||||||||||    
T  29620618 gaggcccagctcgtttgagctgtttgcaccccc 29620650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 44655762 - 44655554
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  44655762 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcacatccttgtgagggaatgaaataatcttagggggcc 44655663  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  44655662 taagagatattaagggggcctaaaaagaaatcaccattatactggatat---------aaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 44655572  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  44655571 tgagctgtttgcaccccc 44655554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 27906809 - 27906911
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27906809 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 27906908  T
Q  121 taa 123  Q
    |||    
T  27906909 taa 27906911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 34247065 - 34246981
Alignment:
Q  25 ggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataat 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34247065 ggaacccccacctaacaccaaaatcaagatgaactaattctaataatcctaaaagagacccatccttgtgagggaataaaataat 34246981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 5316701 - 5316643
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316701 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 5316643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 50881451 - 50881393
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50881451 atgaggaacctccacctaacaccaaaattaagaggaactaattctaataatcctaaaag 50881393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 4971710 - 4971768
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  4971710 atgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaag 4971768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 19955742 - 19955680
Alignment:
Q  17 atatatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  19955742 atatatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 19955680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 23185448 - 23185390
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  23185448 atgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaag 23185390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 9181097 - 9181155
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  9181097 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 9181155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 14146270 - 14146220
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  14146270 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 14146220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 27906949 - 27906999
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 27906999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 44895673 - 44895615
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  44895673 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 44895615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 9173115 - 9173174
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||  |||||||||    
T  9173115 atgaggaacccccacctaacaccaaaagtaagaggacctaattctaataggcctaaaaga 9173174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 41697287 - 41697330
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  41697287 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 41697330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 3406388 - 3406338
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  3406388 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccc 3406338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 3440432 - 3440482
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  3440432 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccc 3440482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5027570 - 5027528
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaatt 63  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  5027570 atgaggaacccccacctaacaccaaaagcaagaggaactaatt 5027528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 6771761 - 6771711
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  6771761 tgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccc 6771711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 6888534 - 6888484
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  6888534 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccc 6888484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 1366972 - 1367029
Alignment:
Q  23 gaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||  |||||||||    
T  1366972 gaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaaga 1367029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 16140018 - 16139975
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  16140018 catccttgagggaggcccaactcgtttgagctgtttgcaccccc 16139975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 5027975 - 5028025
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||| ||||||||| ||||||| ||||||| |||||||||||||||||||    
T  5027975 tgagggtcatccttgggggaggcccagctcggttgagctgtttgcaccccc 5028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 13913574 - 13913632
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||| ||||||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  13913574 atgagaaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 13913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 17168977 - 17168919
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||||||  ||||||||    
T  17168977 atgaggaacccctacctaacaccaaaagcaagaagacctaattctaataggcctaaaag 17168919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 27559658 - 27559600
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||| ||  ||||||| ||||||||||||  ||||||||    
T  27559658 atgaggaacccccacctaacaccataagtaagaggacctaattctaataggcctaaaag 27559600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 3406439 - 3406409
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  3406439 atgaggaacccccacctaacaccaaaatcaa 3406409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 3440381 - 3440411
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  3440381 atgaggaacccccacctaacaccaaaatcaa 3440411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 10912095 - 10912145
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||  |||||| |||||||||||||||||| ||||||||    
T  10912095 tgaggcccatccttggaggaggcccagctcgtttgagctgttcgcaccccc 10912145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 40501882 - 40501940
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||| ||||| |||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  40501882 atgaagaacctccacctaacaccaaaagcaagatgatctaattctaatagacctaaaag 40501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 41697229 - 41697259
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  41697229 atgaggaacccccacctaacaccaaaatcaa 41697259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 38209683 - 38209891
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  38209683 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagagaatgaaataatcttagggggcc 38209782  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||                  |||||| |||||||||||||||| |||||||||    
T  38209783 taagagatattaagggggcctaaaaagaaaccaccattatacttgatat--------aaaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 38209874  T
Q  221 tgagctgtttgcacccc 237  Q
    |||||||||||||||||    
T  38209875 tgagctgtttgcacccc 38209891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 55255284 - 55255182
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55255284 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 55255185  T
Q  121 taa 123  Q
    |||    
T  55255184 taa 55255182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 10978915 - 10978857
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978915 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 10978857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 23509890 - 23509948
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23509890 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 23509948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 34768666 - 34768724
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34768666 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 34768724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 47129002 - 47128944
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47129002 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 47128944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 13460219 - 13460164
Alignment:
Q  24 aggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13460219 aggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 13460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10428297 - 10428355
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  10428297 atgaggaacctccacctaacaccaaaatcaagaggaactaattataataatcctaaaag 10428355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 17679282 - 17679232
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17679282 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccc 17679232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 48209255 - 48209201
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatccta 75  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48209255 atgagaaacccccacctaacaccaaaatcaagaagaactaattctaataatccta 48209201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 1105496 - 1105446
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  1105496 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 1105446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 10431443 - 10431493
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  10431443 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 10431493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 13459849 - 13459799
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13459849 tgaggcccatccttaagggaggctcagctcgtttgagctgtttgcaccccc 13459799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19498519 - 19498461
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  19498519 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 19498461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 24969452 - 24969394
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  24969452 atgaggaacccccacctaacaccaaaagcaagaggatctaattctaataggcctaaaag 24969394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 34027594 - 34027536
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  34027594 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 34027536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 40089531 - 40089473
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  40089531 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 40089473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 55255145 - 55255095
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 55255095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 16845036 - 16844977
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  |||||||||    
T  16845036 atgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaaga 16844977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 5128992 - 5129034
Alignment:
Q  196 atccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  5128992 atccttgagggaggcccagctcgtttgagctgtttgcaccccc 5129034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 38352347 - 38352405
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  ||||||||    
T  38352347 atgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaag 38352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 45560705 - 45560755
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  45560705 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccc 45560755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 47128046 - 47127996
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  47128046 tgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccc 47127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 48208515 - 48208465
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  48208515 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccc 48208465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 54083334 - 54083392
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||  ||||||||    
T  54083334 atgaggaacccctacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 54083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 32128593 - 32128540
Alignment:
Q  27 aacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  32128593 aacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 32128540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 9579477 - 9579516
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcac 234  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9579477 catccttgagggaggcccagctcgtttgagctgtttgcac 9579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 9585172 - 9585211
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcac 234  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9585172 catccttgagggaggcccagctcgtttgagctgtttgcac 9585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 16882486 - 16882545
Alignment:
Q  20 tatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  16882486 tatggggaaccctcacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 16882545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 9578733 - 9578782
Alignment:
Q  23 gaggaacccccacctaacaccaaaatcaagaggaactaattctaataatccta 75  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||||||    
T  9578733 gaggaacccccacctaacaccaaaatcaa---gaactaattataataatccta 9578782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 35779417 - 35779475
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||  ||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  35779417 atgaggaaccttcacctaacatcaaaagcaagaggaactaattctaataggcctaaaag 35779475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 37514623 - 37514573
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||||  |||||| |||||||||||||||||||||||||||    
T  37514623 tgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccc 37514573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 30083405 - 30083360
Alignment:
Q  111 ttagggggcctaagagatattaagggggcctaaaaagaaaccacca 156  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||    
T  30083405 ttagggggtctaagagatattaagggcccctaaaaagaaaccacca 30083360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 34769534 - 34769583
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcacccc 237  Q
    |||||| |||||||||||||||| || |||||||||||| ||||||||||    
T  34769534 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcacccc 34769583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 2790833 - 2790892
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    |||||||||||||||||||   ||||| |||||||| ||||||||||||  |||||||||    
T  2790833 atgaggaacccccacctaatggcaaaagcaagaggacctaattctaataggcctaaaaga 2790892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 32915351 - 32915312
Alignment:
Q  199 cttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  32915351 cttgagggaggcccaactcgtttgagctgtttgcaccccc 32915312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 43455623 - 43455682
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||| ||||  |||||||||    
T  43455623 atgaggaacccccacctaacaccgaaagtaagaggacctaattcaaataggcctaaaaga 43455682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 27596640 - 27596690
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||| | ||||||| |||||||||||||||||| ||||||||    
T  27596640 tgaggcccatcctcgggggaggcccagctcgtttgagctgttcgcaccccc 27596690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 32915400 - 32915370
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  32915400 atgaggaacccccacctaacaccaaaatcaa 32915370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 35465122 - 35465064
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||| |||||||||||||||||| ||| | || ||||||||||||  ||||||||    
T  35465122 atgaggaatccccacctaacaccaaaagcaacatgacctaattctaataggcctaaaag 35465064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 37777315 - 37777373
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||| || |||||||||||| ||||| || ||||||||||||  ||||||||    
T  37777315 atgaggaaccctcaactaacaccaaaagcaagatgacctaattctaataggcctaaaag 37777373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 2135447 - 2135491
Alignment:
Q  34 acctaacaccaaaatcaagaggaactaattctaataatcctaaaa 78  Q
    |||||||||||||| |||||||| | ||||||||||| |||||||    
T  2135447 acctaacaccaaaagcaagaggacccaattctaataagcctaaaa 2135491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 34756456 - 34756665
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  34756456 atgaggaacccccacctaacaacaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatctta-ggggcc 34756554  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatatnnnnnnnnnnnnnnnnnntgaggctcatccttgagggaggctcagctcgtt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| |||||||||||||||| |||||||||    
T  34756555 taagagatattaagggggcctaaaaagaaaccaccattatactggatat-------aaaaaaaaaaatgaggcccatccttgagggaggcccagctcgtt 34756647  T
Q  221 tgagctgtttgcaccccc 238  Q
    ||||||||||||||||||    
T  34756648 tgagctgtttgcaccccc 34756665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 16592160 - 16592222
Alignment:
Q  17 atatatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16592160 atatatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 16592222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 30854339 - 30854282
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30854339 atgaggaacccccacctaacaccaaaat-aagaggaactaattctaataatcctaaaag 30854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 27079021 - 27078963
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  27079021 atgaggaacccccacctaacaccaaaatatagaggaactaattccaataatcctaaaag 27078963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 15480230 - 15480280
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  15480230 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 15480280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 16198884 - 16198942
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  16198884 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 16198942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 19523158 - 19523108
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  19523158 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 19523108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 9364301 - 9364242
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||  |||||||||    
T  9364301 atgaggaacccccacctaacatcaaaagcaagaggacctaattctaatagacctaaaaga 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 16799417 - 16799476
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||  |||||||||    
T  16799417 atgaggaacccccacataacaccaaaagcaagaggacctaattctaatagacctaaaaga 16799476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 28822432 - 28822491
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  28822432 atgatgaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 28822491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 31881598 - 31881641
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  31881598 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 31881641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 38869453 - 38869512
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  38869453 atgagaaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 38869512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 40389625 - 40389684
Alignment:
Q  20 tatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||||  ||||||||    
T  40389625 tatgaggaacccccacctaacactaaaagcaagaggacctaattctaataggcctaaaag 40389684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 36188020 - 36188070
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  36188020 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccc 36188070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 22987470 - 22987518
Alignment:
Q  190 aggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccc 22987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 30853324 - 30853281
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  30853324 catccttgaaggaggcccagctcgtttgagctgtttgcaccccc 30853281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 7670934 - 7670876
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||| | |||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  7670934 atgaggtatccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 7670876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 2274856 - 2274813
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| || ||| ||||||||||||||||||||    
T  2274856 catccttgagggaggcccaactcatttgagctgtttgcaccccc 2274813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 27924092 - 27924033
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||| ||| ||||||||||||| ||| |||| ||||||||||||  |||||||||    
T  27924092 atgaggaacgcccgcctaacaccaaaagcaaaaggacctaattctaataggcctaaaaga 27924033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 15480179 - 15480209
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  15480179 atgaggaacccccacctaacaccaaaatcaa 15480209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 16592846 - 16592896
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| ||||||| | |||||  |||||||||||||||||||||||||||    
T  16592846 tgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccc 16592896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 19523209 - 19523179
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  19523209 atgaggaacccccacctaacaccaaaatcaa 19523179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 22986660 - 22986694
Alignment:
Q  44 aaaatcaagaggaactaattctaataatcctaaaa 78  Q
    ||||| |||||||||||||||||||||||||||||    
T  22986660 aaaattaagaggaactaattctaataatcctaaaa 22986694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 2274898 - 2274870
Alignment:
Q  23 gaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||    
T  2274898 gaggaacccccacctaacaccaaaatcaa 2274870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 18776858 - 18777006
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataatcttagggggcc 120  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18776858 atgagaaacccccacctaacaccaaaaacaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcc 18776957  T
Q  121 taagagatattaagggggcctaaaaagaaaccaccattatactggatat 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18776958 taagagatattaagggggtctaaaaagaaaccaccattatactggatat 18777006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 40357454 - 40357538
Alignment:
Q  25 ggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaataaaataat 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40357454 ggaacccccacctaacaccaaaatcaagatgaactaattctaataatcctaaaagagacccatccttgtgagggaataaaataat 40357538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 8171631 - 8171689
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8171631 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 8171689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 29077230 - 29077172
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  29077230 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaacaatcctgaaag 29077172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 38414968 - 38415027
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  38414968 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 38415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 24525777 - 24525835
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  24525777 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaatatgcctaaaag 24525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 25010443 - 25010385
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  25010443 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 25010385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 28749646 - 28749596
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  28749646 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccc 28749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 23551163 - 23551220
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 78  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  23551163 atgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23551220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 12596437 - 12596480
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  12596437 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 12596480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 18777019 - 18777066
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcacc 235  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacc 18777066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 47985062 - 47985121
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||||  |||||||||    
T  47985062 atgaggaacccccacctaacacaaaaagcaagaggacctaattctaataggcctaaaaga 47985121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 20091373 - 20091431
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||  ||||||||    
T  20091373 atgaggaacccccacctaacaccaaaagtaagaggacctaattctaataggcctaaaag 20091431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 19692104 - 19692045
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||| | ||||||||||||| |||||||| ||||||||||||  |||||||||    
T  19692104 atgaggaaccctcgcctaacaccaaaagcaagaggacctaattctaataggcctaaaaga 19692045  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 10955443 - 10955393
Alignment:
Q  188 tgaggctcatccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||| |||||||||||||||| || |||||||||||| |||||||||||    
T  10955443 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcaccccc 10955393  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 48983936 - 48983994
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    |||||||||||||||||||||||||||  |||||||  |||||||||||  ||||||||    
T  48983936 atgaggaacccccacctaacaccaaaagtaagaggacttaattctaataggcctaaaag 48983994  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 8239701 - 8239637
Alignment:
Q  17 atatatgaggaacccc--cacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||  ||| ||||||||||| |||||||| ||||||||||||  ||||||||    
T  8239701 atatatgaggaacccctccacttaacaccaaaagcaagaggacctaattctaataggcctaaaag 8239637  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 10329502 - 10329550
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaata 69  Q
    ||||| ||||||||| ||||||||||| |||||||| ||||||||||||    
T  10329502 atgagaaacccccacttaacaccaaaagcaagaggacctaattctaata 10329550  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 10955494 - 10955464
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  10955494 atgaggaacccccacctaacaccaaaatcaa 10955464  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 12596379 - 12596409
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaa 51  Q
    |||||||||||||||||||||||||||||||    
T  12596379 atgaggaacccccacctaacaccaaaatcaa 12596409  T

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Target: scaffold0070 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 1353 - 1295
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1353 atgaggaacccccacctaacaccaaaatcaagaggaactaattttaataatcctaaaag 1295  T

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Target: scaffold0070; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 1069 - 1026
Alignment:
Q  195 catccttgagggaggctcagctcgtttgagctgtttgcaccccc 238  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  1069 catccttgagggaggcccagctcgtttgagctgtttgcaccccc 1026  T

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Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 106548 - 106489
Alignment:
Q  21 atgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaaga 80  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||||  |||||||||    
T  106548 atgaggaacccccacctaacaccaaaagcaagaggacctaaatctaataggcctaaaaga 106489  T

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