View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21405_low_1 (Length: 496)
Name: NF21405_low_1
Description: NF21405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21405_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 91 - 478
Target Start/End: Complemental strand, 5589825 - 5589440
Alignment:
| Q |
91 |
cactatgtgttgcaggcaaggaagaatatagtcagcattttgagtcaactaataaaggaaagaagagcatccaatgaaattcacaaagacatgcttggtt |
190 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5589825 |
cactatgtattgcaggcaaggaagaatatagtcagcattttgagtcaactaataaaggaaagaagagcatccaatgaaattcacaaagacatgcttggtt |
5589726 |
T |
|
| Q |
191 |
gtttgatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcattgatctagtgattacacttatgtattctggttatgaaactgtttcaac |
290 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5589725 |
gttggatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcattgatctagtgattacacttatgtattctggttatgaaactgtttcaac |
5589626 |
T |
|
| Q |
291 |
cacttcaatgatggctgtgaaatacctccatgaccatcccaaagctcttgaagaacttagagtgagtacaaaaactccattatttccttaaacataattt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5589625 |
cacttcaatgatggctgtgaaatacctccatgaccatcccaaagctcttgaagaacttagagtgagtacaaaaactccattatttccttaaacataattc |
5589526 |
T |
|
| Q |
391 |
atttttcttaagtatagtataatcgttttaaataaaaaaggtctgcgactacgatttgatacgtgacatcatga-ttttttatgtctat |
478 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5589525 |
atttttcttaagtatagtataatcgttttaaat---aaaggtctgcgactacgatttgatacgtgacatcatgatttttttatgtctat |
5589440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 92 - 476
Target Start/End: Complemental strand, 974641 - 974263
Alignment:
| Q |
92 |
actatgtgttgcaggcaaggaagaatatagtcagcattttgagtcaactaataaaggaaagaagagcatccaatgaaattcacaaagacatgcttggttg |
191 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
974641 |
actatgtgttgcaggcaagaaagaatatagtcagcattttgagtcaactattaaaggaaagaagagcatccaatgaaactcacaaagacatgcttggtta |
974542 |
T |
|
| Q |
192 |
tttgatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcattgatctagtgattacacttatgtattctggttatgaaactgtttcaacc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
974541 |
tttgatggaaagagaagaaaataagtacaaactaagtgatgaagaaatcattgatcaagtgattacacttatgtattctggttatgaaactgtttcaacc |
974442 |
T |
|
| Q |
292 |
acttcaatgatggctgtgaaatacctccatgaccatcccaaagctcttgaagaacttagagtgagtacaaaaactccattatttccttaaacataattta |
391 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
974441 |
acatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaagaactaagagtgagtac-aaaactccattatttccttaagcataatt-- |
974345 |
T |
|
| Q |
392 |
tttttcttaagtatagtataatcgttttaaataaaaaaggtctgcgactacgatttgatacgtgacatcatgattttttatgtct |
476 |
Q |
| |
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||||||||||||||| ||||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
974344 |
tttttcttaagtataatataaccgttttaaat---aaaggtctgcggctgcgatttgatacgtgacatcatgattttttatgtct |
974263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 5065702 - 5065580
Alignment:
| Q |
219 |
caaactaagtgatgaagaaatcattgatctagtgattacacttatgtattctggttatgaaactgtttcaaccacttcaatgatggctgtgaaatacctc |
318 |
Q |
| |
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|||| ||| |||||||||| | ||||||||| | |||||| ||||||||||||||||||||||| ||||||| || |||||||||||||| || ||||| |
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| T |
5065702 |
caaattaaatgatgaagaacttattgatctaatcattacaattatgtattctggttatgaaactatttcaactacatcaatgatggctgtaaagtacctg |
5065603 |
T |
|
| Q |
319 |
catgaccatcccaaagctcttga |
341 |
Q |
| |
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||||| ||||| |||| |||||| |
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| T |
5065602 |
catgatcatcctaaagttcttga |
5065580 |
T |
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