View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21405_low_2 (Length: 455)
Name: NF21405_low_2
Description: NF21405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21405_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 67 - 440
Target Start/End: Original strand, 4413516 - 4413888
Alignment:
| Q |
67 |
ttcgttcttgaactggccttatttttatcataccatttgtgcttttttacgtcnnnnnnncttattgttgttatggaattgaattaggataaatttatag |
166 |
Q |
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| T |
4413516 |
ttcgttcttgaactggccttatttttatcataccatttgtgcttttt-acgtctttttttcttattgttgttatggaattgaattaggataaatttatag |
4413614 |
T |
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| Q |
167 |
atgaaaaaacgatggtaaaattttgatggcttgtttcttccttgatattcaactagttatcgcaatatatatatagtaccatcaatgcaagaacttaata |
266 |
Q |
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| T |
4413615 |
atgaaaaaacgatggtaaaattttgatggcttgtttcttccttgatattcaactagttatcacaataaatatatattaccatcaatgcaagaacttaata |
4413714 |
T |
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| Q |
267 |
gcaattgttgcgtggaaagaacatcaaaacaaatatttgatcgctcaacaaaatgattggcctcaagtgatgaactctcacaagagaatgaatagtttga |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
4413715 |
gcaattgttgcgtggaaagaacatcaaaacaaatatttgatcgctcaacaaaatgattggcctgaagtgatgaactctcacaagagaatgaatagttcga |
4413814 |
T |
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| Q |
367 |
aagaacacgggtttgattcctaaatgaaacaaattctttgatccactagtgtatagataacaaaatattacaat |
440 |
Q |
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||||||||||||||||||| || |||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
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| T |
4413815 |
aagaacacgggtttgattcttagatgaaacaaactctttgatccattagtgtataaataacaaaatattacaat |
4413888 |
T |
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