View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21405_low_3 (Length: 424)
Name: NF21405_low_3
Description: NF21405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21405_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 197 - 418
Target Start/End: Complemental strand, 35394255 - 35394034
Alignment:
| Q |
197 |
cagaagattaaagatatgaatatgaaatgtgagagtgaatgagtgagaatactttttgacaagcagagattggatgatgaaccataggttgtccagctaa |
296 |
Q |
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| T |
35394255 |
cagaagattatagatatgaatatgaaatgtgagagtgaacgagtgagaatactttttgacaagcagagattggatgatgaaccattggttgtccagctaa |
35394156 |
T |
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| Q |
297 |
tggaaagagtggtttaggaatgttgaatgataatggacggaatcgagtgcctttggtgggtcctccaaccatgataaccgccacaactctctcttctgca |
396 |
Q |
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| T |
35394155 |
tggaaagagtggtttaggaatgttgaatgataatggacggaatcgagtgcctttggtgggtcctccaaccatgataaccgccacaactctctcttctgca |
35394056 |
T |
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| Q |
397 |
atccccatattcttcgacatcc |
418 |
Q |
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|||||||| || ||||| |||| |
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| T |
35394055 |
atccccatcttattcgagatcc |
35394034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 35394463 - 35394325
Alignment:
| Q |
18 |
aataagtgaattcattcaggcatgaaatccaacctaacagggagtttaaggtcgttggagatggaagagacgtataatgcaaattcgcgttcttcgtaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35394463 |
aataagtgaattcattcaggcatgaaatccaacctaacaggaagtttaaggtcgttggagatggaagagacgtataatgcaaattcgcgttcttcgtaga |
35394364 |
T |
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| Q |
118 |
agccaatgagataaatccgagccaaattaggaatctggc |
156 |
Q |
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| T |
35394363 |
agccaatgagataaatccgagccaaattaggaatctggc |
35394325 |
T |
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